The 2.0 version of rSNPBase

Variant report

Variant rs563607396
Chromosome Location chr1:172794958-172794959
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172788400-172795400 Weak transcription HUES48 Cell Line embryonic stem cell
2 chr1:172788800-172797000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr1:172789000-172795400 Weak transcription Duodenum Mucosa Duodenum
4 chr1:172789000-172795400 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr1:172789000-172795400 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr1:172789000-172796600 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:172789000-172797000 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr1:172789400-172795400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
9 chr1:172790000-172795200 Weak transcription Primary B cells from peripheral blood blood
10 chr1:172790600-172795200 Weak transcription Primary B cells from cord blood blood
11 chr1:172790800-172795400 Weak transcription A549 lung
12 chr1:172791000-172795200 Weak transcription Monocytes-CD14+_RO01746 blood
13 chr1:172791200-172795200 Weak transcription Primary monocytes fromperipheralblood blood
14 chr1:172791200-172795400 Weak transcription Fetal Lung lung
15 chr1:172791200-172806200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:172791400-172795400 Weak transcription Brain Hippocampus Middle brain
17 chr1:172791400-172795400 Weak transcription Placenta Amnion Placenta Amnion
18 chr1:172791800-172795200 Weak transcription Primary hematopoietic stem cells blood
19 chr1:172792000-172795000 Weak transcription Dnd41 blood
20 chr1:172792000-172795600 Weak transcription K562 blood
21 chr1:172793200-172795600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:172793600-172795200 Weak transcription Rectal Smooth Muscle rectum
23 chr1:172793600-172795400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:172793600-172795400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:172793600-172795600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr1:172793800-172795000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr1:172793800-172795000 Weak transcription NHLF lung
28 chr1:172793800-172795400 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr1:172793800-172795400 Weak transcription Adipose Nuclei Adipose
30 chr1:172793800-172795400 Weak transcription Osteobl bone
31 chr1:172793800-172795600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
32 chr1:172794000-172795000 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr1:172794000-172795200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr1:172794000-172795400 Weak transcription Muscle Satellite Cultured Cells --
35 chr1:172794200-172795000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:172794200-172795400 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr1:172794200-172795400 Weak transcription HSMMtube muscle
38 chr1:172794400-172795200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr1:172794800-172795400 Enhancers NHDF-Ad bronchial
40 chr1:172794800-172795800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr1:172794800-172796000 Enhancers HSMM muscle

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Last update: Aug 31, 2015