Variant report

Variant	rs56361151
Chromosome Location	chr12:118063365-118063366
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10039840	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10519619	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11742877	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12173248	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13354856	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1373322	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17145950	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17145954	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2130733	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4073706	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4073707	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4639259	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4895213	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4895214	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55700824	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55927647	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55992493	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56279521	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56339003	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57903181	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59277139	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62375599	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62375600	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6865691	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6874179	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6877373	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6884836	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs720649	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72794430	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7712290	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9654530	0.90[EUR][1000 genomes]
rs9885349	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118061000-118075000	Weak transcription	HUVEC	blood vessel

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