Variant report

Variant	rs563620122
Chromosome Location	chr9:94491164-94491165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94489892..94493220-chr9:94493878..94496839,3	K562	blood:
2	chr9:94490367..94492773-chr9:94495285..94496842,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv6612	chr9:94490644-94535738	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94477200-94496800	Weak transcription	NHLF	lung
2	chr9:94477200-94533000	Weak transcription	Fetal Kidney	kidney
3	chr9:94482400-94491600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:94483000-94496600	Strong transcription	Fetal Stomach	stomach
5	chr9:94483400-94501600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:94483600-94504000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:94483600-94519400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:94485600-94491600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:94485800-94498400	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:94486200-94521000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:94486800-94493000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:94486800-94496800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:94486800-94517400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:94487000-94496600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:94487000-94502200	Weak transcription	Esophagus	oesophagus
16	chr9:94487000-94535400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr9:94487200-94496800	Weak transcription	Spleen	Spleen
18	chr9:94487200-94497000	Weak transcription	Colonic Mucosa	Colon
19	chr9:94487600-94493800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:94487600-94496600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr9:94487800-94493000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:94488200-94496600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:94488400-94491400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:94489000-94492400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr9:94489000-94493000	Weak transcription	Gastric	stomach
26	chr9:94489000-94508800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:94489200-94491600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:94489400-94492200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:94489800-94491200	Enhancers	K562	blood
30	chr9:94490000-94491400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:94490000-94491400	Weak transcription	NHDF-Ad	bronchial
32	chr9:94490000-94493200	Weak transcription	Fetal Intestine Large	intestine
33	chr9:94490000-94495000	Strong transcription	Fetal Lung	lung
34	chr9:94490200-94491600	Weak transcription	Ovary	ovary
35	chr9:94490200-94491800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:94490200-94496400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:94490200-94496400	Weak transcription	Pancreas	Pancrea
38	chr9:94490200-94497400	Strong transcription	Fetal Intestine Small	intestine
39	chr9:94490400-94491600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:94490400-94491800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:94490400-94521000	Weak transcription	Right Atrium	heart
42	chr9:94490600-94492400	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr9:94491000-94492000	Enhancers	Colon Smooth Muscle	Colon
44	chr9:94491000-94492000	Enhancers	HSMMtube	muscle
45	chr9:94491000-94495600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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