Variant report

Variant	rs56362746
Chromosome Location	chr8:61507136-61507137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61499691..61501377-chr8:61506333..61508356,2	MCF-7	breast:
2	chr8:61506351..61508434-chr8:61511898..61514412,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4145666	0.87[EUR][1000 genomes]
rs72648574	0.89[ASN][1000 genomes]
rs72648593	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72650430	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530383	chr8:61431756-61605551	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv870164	chr8:61484657-61529482	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv6218	chr8:61485410-61530933	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1796952	chr8:61492893-61531418	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61466400-61516800	Weak transcription	Stomach Mucosa	stomach
2	chr8:61467200-61515400	Weak transcription	Fetal Brain Male	brain
3	chr8:61476200-61517000	Weak transcription	Brain Angular Gyrus	brain
4	chr8:61481000-61527400	Weak transcription	Psoas Muscle	Psoas
5	chr8:61483800-61515800	Weak transcription	Colonic Mucosa	Colon
6	chr8:61485400-61515400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:61489400-61514000	Weak transcription	Right Ventricle	heart
8	chr8:61489600-61510200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:61491400-61517000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:61493600-61510400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:61493600-61518000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr8:61495600-61516600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:61495600-61517000	Weak transcription	Pancreas	Pancrea
14	chr8:61495600-61517200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:61495600-61517600	Weak transcription	Spleen	Spleen
16	chr8:61496400-61515400	Strong transcription	Primary B cells from peripheral blood	blood
17	chr8:61496600-61508600	Strong transcription	HSMM	muscle
18	chr8:61496600-61511000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:61496600-61515000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr8:61496800-61508400	Strong transcription	Fetal Intestine Large	intestine
21	chr8:61496800-61515200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr8:61496800-61517200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr8:61497000-61511800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:61497400-61512000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:61498200-61517200	Weak transcription	Gastric	stomach
26	chr8:61499400-61516600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:61499600-61509200	Weak transcription	Fetal Intestine Small	intestine
28	chr8:61499600-61514000	Weak transcription	Fetal Stomach	stomach
29	chr8:61500400-61542200	Weak transcription	Hela-S3	cervix
30	chr8:61500600-61509800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:61500800-61511200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:61501200-61508000	Strong transcription	NHEK	skin
33	chr8:61501200-61512200	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr8:61501800-61509800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr8:61502400-61507800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:61503200-61509000	Strong transcription	NHDF-Ad	bronchial
37	chr8:61503400-61508600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:61503400-61508600	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr8:61503400-61508800	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr8:61503400-61517200	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr8:61503800-61508600	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr8:61504000-61507600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:61504000-61508200	Strong transcription	HSMMtube	muscle
44	chr8:61504000-61508600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr8:61504000-61508600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr8:61504000-61508600	Strong transcription	Duodenum Mucosa	Duodenum
47	chr8:61504000-61508600	Strong transcription	Placenta	Placenta
48	chr8:61504000-61508600	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr8:61504000-61508600	Strong transcription	Dnd41	blood
50	chr8:61504000-61508600	Strong transcription	Osteobl	bone

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