Variant report

Variant	rs56364633
Chromosome Location	chr8:125974796-125974797
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125973961..125977319-chr8:126009388..126012529,4	MCF-7	breast:
2	chr1:121482956..121485371-chr8:125973330..125975388,2	MCF-7	breast:
3	chr8:125968439..125970169-chr8:125972216..125975033,2	K562	blood:
4	chr8:125974353..125976403-chr8:125979440..125981150,2	MCF-7	breast:
5	chr8:125740158..125742192-chr8:125973561..125975189,3	MCF-7	breast:
6	chr8:125973073..125977537-chr8:126009293..126012548,4	MCF-7	breast:
7	chr8:125973546..125976757-chr8:125983889..125987786,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104549	Chromatin interaction
ENSG00000180938	Chromatin interaction
ENSG00000170873	Chromatin interaction
ENSG00000253513	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12677337	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900152	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1834716	0.88[EUR][1000 genomes]
rs7843302	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125969800-125985000	Weak transcription	Right Atrium	heart
2	chr8:125972800-125976200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:125973000-125975000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:125973200-125975200	Enhancers	Fetal Muscle Leg	muscle
5	chr8:125973200-125975800	Enhancers	Placenta	Placenta
6	chr8:125973400-125975000	Enhancers	HepG2	liver
7	chr8:125973400-125975400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr8:125973800-125975400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr8:125973800-125975400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:125973800-125976000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:125973800-125976000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:125973800-125976000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:125974000-125974800	Enhancers	Fetal Intestine Small	intestine
14	chr8:125974000-125975200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:125974000-125975200	Enhancers	Fetal Intestine Large	intestine
16	chr8:125974000-125976800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:125974000-125977400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr8:125974000-125977600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:125974200-125976400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:125974400-125975000	Weak transcription	K562	blood
21	chr8:125974400-125976000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr8:125974600-125975200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:125974600-125976000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:125974600-125976000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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