Variant report

Variant	rs563646855
Chromosome Location	chr11:94276849-94276850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr11:94276813-94277474	A549	lung:	n/a	n/a
2	POLR2A	chr11:94276828-94277941	MCF-7	breast:	n/a	n/a
3	MAX	chr11:94276463-94278246	HCT-116	colon:	n/a	chr11:94276987-94276997
4	MAZ	chr11:94276727-94278176	K562	blood:	n/a	chr11:94276987-94276997
5	RELA	chr11:94276144-94277715	GM19193	blood:	n/a	chr11:94276320-94276329 chr11:94276320-94276329
6	POLR2A	chr11:94276783-94277700	K562	blood:	n/a	n/a
7	MAX	chr11:94276783-94277944	GM12878	blood:	n/a	chr11:94276987-94276997
8	POLR2A	chr11:94276731-94278094	GM18526	blood:	n/a	n/a
9	TBP	chr11:94276825-94277950	H1-hESC	embryonic stem cell:	n/a	n/a
10	EGR1	chr11:94276672-94277794	HCT-116	colon:	n/a	chr11:94277352-94277366 chr11:94276961-94276971
11	POLR2A	chr11:94276324-94278276	GM19193	blood:	n/a	n/a
12	CTCF	chr11:94276736-94277206	GM12878	blood:	n/a	n/a
13	POLR2A	chr11:94276618-94277929	K562	blood:	n/a	n/a
14	TBL1XR1	chr11:94276542-94276859	GM12878	blood:	n/a	n/a
15	GABPA	chr11:94276776-94277561	HL-60	blood:	n/a	n/a
16	MAX	chr11:94276666-94278264	K562	blood:	n/a	chr11:94276987-94276997
17	SRF	chr11:94276791-94277467	ECC-1	luminal epithelium:	n/a	n/a
18	POLR2A	chr11:94276533-94279695	HL-60	blood:	n/a	n/a
19	POLR2A	chr11:94276761-94277844	ECC-1	luminal epithelium:	n/a	n/a
20	E2F6	chr11:94276833-94278318	K562	blood:	n/a	chr11:94277003-94277014 chr11:94277092-94277102
21	SIN3A	chr11:94276651-94278975	H1-hESC	embryonic stem cell:	n/a	n/a
22	TBP	chr11:94276737-94278119	K562	blood:	n/a	n/a
23	POLR2A	chr11:94276767-94278145	GM12892	blood:	n/a	n/a
24	POLR2A	chr11:94276820-94277609	GM12878	blood:	n/a	n/a
25	REST	chr11:94276772-94277886	HL-60	blood:	n/a	n/a
26	MAX	chr11:94276747-94277196	H1-hESC	embryonic stem cell:	n/a	chr11:94276987-94276997
27	HMGN3	chr11:94276810-94278323	K562	blood:	n/a	n/a
28	MAX	chr11:94276750-94277741	HepG2	liver:	n/a	chr11:94276987-94276997
29	POLR2A	chr11:94276756-94277830	GM12891	blood:	n/a	n/a
30	ELF1	chr11:94276774-94277839	GM12878	blood:	n/a	chr11:94276988-94277000 chr11:94276959-94276971
31	E2F6	chr11:94276759-94277260	A549	lung:	n/a	chr11:94277003-94277014 chr11:94277092-94277102
32	CHD1	chr11:94276766-94277340	GM12878	blood:	n/a	n/a
33	USF1	chr11:94276843-94277746	ECC-1	luminal epithelium:	n/a	chr11:94276897-94276913
34	POLR2A	chr11:94276650-94278012	GM12892	blood:	n/a	n/a
35	ZNF263	chr11:94276843-94277775	HEK293-T-REx	kidney:	n/a	n/a
36	POLR2A	chr11:94276752-94277793	K562	blood:	n/a	n/a
37	HEY1	chr11:94276752-94277752	K562	blood:	n/a	chr11:94277126-94277141
38	TCF12	chr11:94276745-94277882	ECC-1	luminal epithelium:	n/a	n/a
39	SP1	chr11:94276665-94277623	A549	lung:	n/a	n/a
40	E2F6	chr11:94276674-94278954	H1-hESC	embryonic stem cell:	n/a	chr11:94277003-94277014 chr11:94277092-94277102
41	TBP	chr11:94276422-94277646	GM12878	blood:	n/a	n/a
42	GABPA	chr11:94276848-94277308	K562	blood:	n/a	n/a
43	ELF1	chr11:94276816-94277609	MCF-7	breast:	n/a	chr11:94276988-94277000 chr11:94276959-94276971
44	REST	chr11:94276823-94277540	SK-N-SH	brain:	n/a	n/a
45	TEAD4	chr11:94276716-94277698	K562	blood:	n/a	n/a
46	POLR2A	chr11:94276843-94277608	K562	blood:	n/a	n/a
47	POLR2A	chr11:94276812-94277961	GM10847	blood:	n/a	n/a
48	E2F6	chr11:94276749-94278232	K562	blood:	n/a	chr11:94277003-94277014 chr11:94277092-94277102
49	MYC	chr11:94276703-94278135	K562	blood:	n/a	chr11:94276987-94276997
50	POLR2A	chr11:94276815-94277863	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94225466..94228271-chr11:94275709..94278301,3	K562	blood:
2	chr11:94226771..94229140-chr11:94275887..94279295,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MRE11A-3	chr11:94276131-94277949	NONHSAT023724
2	lnc-MRE11A-3	chr11:94275325-94277016	NONHSAT023723

Variant related genes	Relation type
FUT4	TF binding region
PIWIL4	TF binding region
ENSG00000168876	Chromatin interaction
ENSG00000020922	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390466	chr11:94276729-94279277	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94276200-94277000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
2	chr11:94276200-94277000	Flanking Active TSS	Dnd41	blood
3	chr11:94276200-94277000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr11:94276200-94277200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr11:94276200-94277800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr11:94276400-94277000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
7	chr11:94276400-94277000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
8	chr11:94276400-94277000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr11:94276400-94277000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
10	chr11:94276400-94277000	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr11:94276400-94277000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:94276400-94277000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:94276400-94277000	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr11:94276400-94277000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
15	chr11:94276400-94277000	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr11:94276400-94277000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr11:94276400-94277000	Flanking Active TSS	GM12878-XiMat	blood
18	chr11:94276400-94277200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr11:94276400-94277200	Flanking Active TSS	Colonic Mucosa	Colon
20	chr11:94276400-94277600	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr11:94276400-94279200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr11:94276400-94279200	Active TSS	Brain Substantia Nigra	brain
23	chr11:94276400-94279600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:94276400-94280000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr11:94276600-94277000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:94276600-94277000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:94276600-94277000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:94276600-94277000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
29	chr11:94276600-94277000	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr11:94276600-94277000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr11:94276600-94277000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr11:94276600-94277000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:94276600-94277000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:94276600-94277000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr11:94276600-94277000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:94276600-94277000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:94276600-94277000	Flanking Active TSS	Brain Germinal Matrix	brain
38	chr11:94276600-94277000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr11:94276600-94277000	Flanking Active TSS	Fetal Heart	heart
40	chr11:94276600-94277000	Flanking Active TSS	Fetal Muscle Leg	muscle
41	chr11:94276600-94277000	Flanking Active TSS	Fetal Stomach	stomach
42	chr11:94276600-94277000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr11:94276600-94277000	Flanking Active TSS	Stomach Mucosa	stomach
44	chr11:94276600-94277000	Flanking Active TSS	HSMMtube	muscle
45	chr11:94276600-94277000	Flanking Active TSS	HUVEC	blood vessel
46	chr11:94276600-94277000	Flanking Active TSS	K562	blood
47	chr11:94276600-94277000	Flanking Active TSS	Osteobl	bone
48	chr11:94276600-94277200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr11:94276600-94277200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr11:94276600-94277200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood

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