Variant report

Variant	rs563650112
Chromosome Location	chr15:43093069-43093070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43093067..43093836-chr15:43218523..43219050,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv974564	chr15:43092730-43095751	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43030000-43093600	Weak transcription	Colonic Mucosa	Colon
2	chr15:43053600-43112200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:43054800-43146000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:43056800-43116800	Weak transcription	HepG2	liver
5	chr15:43057600-43107000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:43060800-43122200	Weak transcription	GM12878-XiMat	blood
7	chr15:43063400-43093600	Weak transcription	Esophagus	oesophagus
8	chr15:43063400-43136200	Weak transcription	Psoas Muscle	Psoas
9	chr15:43064000-43114200	Weak transcription	Fetal Kidney	kidney
10	chr15:43064800-43150800	Weak transcription	HSMM	muscle
11	chr15:43066400-43095600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:43066600-43097600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:43067400-43147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:43067800-43095200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:43068400-43093600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:43069000-43093400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:43075200-43093600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:43075200-43143800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr15:43075400-43135800	Weak transcription	HSMMtube	muscle
20	chr15:43075600-43093400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:43075600-43093600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:43075600-43093600	Weak transcription	Fetal Lung	lung
23	chr15:43075600-43093600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr15:43075600-43150800	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:43075800-43093200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:43075800-43093200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:43075800-43093200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:43075800-43093200	Weak transcription	Right Ventricle	heart
29	chr15:43075800-43093200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr15:43075800-43093400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:43075800-43093400	Weak transcription	Ovary	ovary
32	chr15:43075800-43093600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr15:43075800-43093600	Weak transcription	Brain Substantia Nigra	brain
34	chr15:43075800-43094400	Weak transcription	Fetal Thymus	thymus
35	chr15:43075800-43117200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:43075800-43119200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr15:43075800-43124800	Weak transcription	Hela-S3	cervix
38	chr15:43075800-43134800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr15:43075800-43159200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:43076000-43094000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr15:43077400-43102200	Weak transcription	Fetal Brain Male	brain
42	chr15:43085800-43093200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:43085800-43093400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:43086800-43093200	Weak transcription	Fetal Intestine Large	intestine
45	chr15:43087000-43093200	Weak transcription	Brain Anterior Caudate	brain
46	chr15:43087000-43093200	Weak transcription	Fetal Muscle Leg	muscle
47	chr15:43087000-43093200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr15:43087000-43093400	Weak transcription	Primary T cells from cord blood	blood
49	chr15:43087000-43093400	Weak transcription	Adipose Nuclei	Adipose
50	chr15:43087000-43093600	Weak transcription	Brain Angular Gyrus	brain

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