Variant report

Variant	rs563657207
Chromosome Location	chr5:68816939-68816940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018410	chr5:68692244-68822384	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1023116	chr5:68744307-68867282	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1034024	chr5:68760271-69118123	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv1804444	chr5:68812530-68838432	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv1818827	chr5:68812530-68849594	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv1832055	chr5:68812530-68849594	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv1830977	chr5:68815501-68850642	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68790200-68824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:68799000-68823200	Weak transcription	Placenta	Placenta
3	chr5:68799400-68821800	Weak transcription	Fetal Stomach	stomach
4	chr5:68805600-68821600	Weak transcription	Lung	lung
5	chr5:68805600-68823400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:68805600-68826200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:68805600-68826600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:68806000-68824200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr5:68806400-68826400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:68806800-68821400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:68807000-68821400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:68807000-68821600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:68809200-68817000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:68809600-68817200	Weak transcription	NHLF	lung
15	chr5:68810400-68821600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr5:68810400-68821800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:68810400-68823600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:68812200-68818000	Enhancers	Stomach Mucosa	stomach
19	chr5:68812600-68818000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr5:68814000-68823400	Weak transcription	Fetal Lung	lung
21	chr5:68814400-68817000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:68814400-68823600	Weak transcription	Small Intestine	intestine
23	chr5:68814600-68817000	Enhancers	Pancreas	Pancrea
24	chr5:68814600-68822000	Weak transcription	Fetal Kidney	kidney
25	chr5:68814800-68818000	Genic enhancers	Fetal Intestine Small	intestine
26	chr5:68815000-68818600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr5:68815400-68826600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr5:68815600-68817600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr5:68815600-68817600	Genic enhancers	Fetal Intestine Large	intestine
30	chr5:68815800-68831000	Weak transcription	HepG2	liver
31	chr5:68816000-68817000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr5:68816000-68821600	Weak transcription	Liver	Liver
33	chr5:68816000-68821600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr5:68816200-68817600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr5:68816200-68818200	Enhancers	HUVEC	blood vessel
36	chr5:68816400-68817000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr5:68816400-68817200	Strong transcription	GM12878-XiMat	blood
38	chr5:68816400-68817400	Enhancers	NH-A	brain
39	chr5:68816400-68817600	Enhancers	NHEK	skin
40	chr5:68816400-68817600	Enhancers	Osteobl	bone
41	chr5:68816400-68817800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:68816400-68817800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr5:68816600-68817000	Flanking Active TSS	Hela-S3	cervix
44	chr5:68816600-68817400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr5:68816600-68817600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr5:68816800-68817000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr5:68816800-68817000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:68816800-68817000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr5:68816800-68817200	Flanking Active TSS	A549	lung
50	chr5:68816800-68817200	Active TSS	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links