Variant report

Variant	rs563665622
Chromosome Location	chr2:98894602-98894603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1004082	chr2:98792256-98967681	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv535833	chr2:98792256-98967681	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1002366	chr2:98877050-98904494	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv961333	chr2:98894552-98898661	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98888800-98897000	Weak transcription	Ovary	ovary
2	chr2:98893600-98895600	Enhancers	Placenta	Placenta
3	chr2:98893600-98897000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr2:98893800-98894800	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr2:98894000-98896800	Enhancers	Stomach Mucosa	stomach
6	chr2:98894000-98897400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr2:98894200-98895800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:98894400-98896000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:98894400-98896000	Weak transcription	Fetal Kidney	kidney
10	chr2:98894600-98894800	Bivalent Enhancer	Small Intestine	intestine
11	chr2:98894600-98895000	Enhancers	Colonic Mucosa	Colon
12	chr2:98894600-98898400	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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