Variant report

Variant	rs563684573
Chromosome Location	chr7:140182575-140182576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140178138..140180332-chr7:140181621..140183452,2	MCF-7	breast:
2	chr7:140182169..140184861-chr7:140185042..140187424,2	K562	blood:
3	chr7:140175927..140181758-chr7:140182392..140187030,7	K562	blood:
4	chr7:140177800..140180943-chr7:140182386..140186052,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133606	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
4	esv3377641	chr7:140181549-140190537	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3492577	chr7:140181601-140190476	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3492578	chr7:140181601-140190476	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140179800-140183000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:140179800-140183400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:140179800-140183400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:140179800-140184400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:140179800-140184600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:140179800-140184800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:140179800-140185200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:140179800-140187800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:140179800-140198000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:140180000-140183200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:140180000-140183200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:140180000-140183200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:140180000-140183400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:140180000-140184400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:140180000-140184400	Weak transcription	Fetal Intestine Large	intestine
16	chr7:140180000-140184400	Weak transcription	Fetal Intestine Small	intestine
17	chr7:140180000-140184400	Weak transcription	Hela-S3	cervix
18	chr7:140180000-140184400	Weak transcription	K562	blood
19	chr7:140180000-140184600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:140180000-140184600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:140180000-140184600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:140180000-140184800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:140180000-140184800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:140180000-140184800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr7:140180000-140185200	Weak transcription	NHEK	skin
26	chr7:140180000-140188200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:140181400-140183200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:140181600-140183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:140181600-140183200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr7:140181600-140183200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:140182200-140184600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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