Variant report

Variant	rs56369393
Chromosome Location	chr5:7982728-7982729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11738171	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11738225	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11738985	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11740037	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11740090	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11742640	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11746733	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55754831	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55890345	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56286446	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56308771	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56330330	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56404070	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716579	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716581	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718939	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718941	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718942	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718943	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718954	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718956	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv597005	chr5:7860404-8093077	Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1027319	chr5:7963460-7989659	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7982200-7982800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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