Variant report

Variant	rs563694922
Chromosome Location	chr8:127845760-127845761
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:127844604..127847451-chr8:127850237..127852011,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv6382	chr8:127845446-127890549	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127837800-127845800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:127837800-127845800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:127840400-127845800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:127840600-127845800	Weak transcription	Fetal Kidney	kidney
5	chr8:127840800-127845800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:127840800-127845800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:127840800-127845800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:127840800-127845800	Enhancers	HSMM	muscle
9	chr8:127841000-127845800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:127841000-127845800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:127842400-127847000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:127843800-127845800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:127844000-127845800	Weak transcription	NHEK	skin
14	chr8:127844400-127847800	Enhancers	Fetal Muscle Leg	muscle
15	chr8:127844400-127848000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:127844600-127845800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:127844800-127847200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr8:127845000-127845800	Enhancers	HUVEC	blood vessel
19	chr8:127845000-127845800	Enhancers	NHLF	lung
20	chr8:127845000-127846000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:127845000-127846200	Enhancers	Spleen	Spleen
22	chr8:127845000-127846600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr8:127845000-127846800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr8:127845000-127846800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:127845000-127846800	Enhancers	Psoas Muscle	Psoas
26	chr8:127845000-127847000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:127845000-127847200	Enhancers	Fetal Muscle Trunk	muscle
28	chr8:127845200-127846800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr8:127845200-127846800	Enhancers	Fetal Heart	heart
30	chr8:127845400-127845800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:127845400-127845800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr8:127845400-127846000	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr8:127845400-127846600	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr8:127845400-127846600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:127845400-127846800	Enhancers	Colon Smooth Muscle	Colon
36	chr8:127845400-127846800	Enhancers	Fetal Lung	lung
37	chr8:127845400-127846800	Enhancers	Fetal Stomach	stomach
38	chr8:127845400-127847000	Enhancers	Placenta	Placenta
39	chr8:127845600-127845800	Enhancers	HSMMtube	muscle
40	chr8:127845600-127846200	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr8:127845600-127846200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:127845600-127846200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr8:127845600-127846200	Enhancers	Brain Anterior Caudate	brain
44	chr8:127845600-127846200	Flanking Active TSS	NH-A	brain
45	chr8:127845600-127846200	Flanking Active TSS	NHDF-Ad	bronchial
46	chr8:127845600-127846400	Enhancers	H1 Cell Line	embryonic stem cell
47	chr8:127845600-127846400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr8:127845600-127846400	Enhancers	Ovary	ovary
49	chr8:127845600-127846600	Enhancers	Right Atrium	heart
50	chr8:127845600-127846600	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links