Variant report

Variant	rs563722536
Chromosome Location	chr4:82135607-82135608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3356500	chr4:82134953-82137501	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82132200-82136200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:82133200-82136000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:82134200-82136600	Active TSS	NHDF-Ad	bronchial
4	chr4:82134400-82137200	Active TSS	NHLF	lung
5	chr4:82134600-82135800	Bivalent/Poised TSS	Fetal Brain Male	brain
6	chr4:82134600-82137000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
7	chr4:82134800-82135800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:82134800-82136400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:82134800-82136800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:82135000-82136800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:82135200-82136400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
12	chr4:82135200-82136600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
13	chr4:82135200-82137200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
14	chr4:82135200-82137200	Active TSS	Rectal Smooth Muscle	rectum
15	chr4:82135400-82135800	Active TSS	Colonic Mucosa	Colon
16	chr4:82135400-82135800	Active TSS	Lung	lung
17	chr4:82135400-82136000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
18	chr4:82135400-82136000	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
19	chr4:82135400-82136400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
20	chr4:82135400-82136600	Active TSS	Brain Substantia Nigra	brain
21	chr4:82135400-82136600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
22	chr4:82135400-82136800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
23	chr4:82135400-82136800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
24	chr4:82135400-82136800	Flanking Bivalent TSS/Enh	HMEC	breast
25	chr4:82135400-82136800	Bivalent/Poised TSS	NHEK	skin
26	chr4:82135400-82137000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
27	chr4:82135400-82137000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:82135400-82137000	Active TSS	Brain Angular Gyrus	brain
29	chr4:82135400-82137000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
30	chr4:82135400-82137000	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr4:82135400-82137000	Active TSS	Right Atrium	heart
32	chr4:82135400-82137000	Bivalent/Poised TSS	Osteobl	bone
33	chr4:82135400-82137200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
34	chr4:82135400-82137200	Active TSS	Brain Anterior Caudate	brain
35	chr4:82135400-82137400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
36	chr4:82135400-82137400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
37	chr4:82135400-82137400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr4:82135600-82135800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr4:82135600-82135800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr4:82135600-82135800	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:82135600-82135800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:82135600-82135800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
43	chr4:82135600-82135800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:82135600-82135800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
45	chr4:82135600-82135800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr4:82135600-82135800	Bivalent Enhancer	Liver	Liver
47	chr4:82135600-82135800	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr4:82135600-82135800	Bivalent Enhancer	Fetal Muscle Leg	muscle
49	chr4:82135600-82135800	Bivalent Enhancer	Left Ventricle	heart
50	chr4:82135600-82135800	Active TSS	Pancreas	Pancrea

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