Variant report

Variant	rs563735546
Chromosome Location	chr9:97140386-97140387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv982324	chr9:97139062-97200156	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97137000-97140800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:97137800-97140600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:97137800-97153000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:97138000-97140400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:97138000-97140600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:97138000-97140600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:97138000-97140600	Weak transcription	Left Ventricle	heart
8	chr9:97138000-97141800	Weak transcription	Fetal Intestine Large	intestine
9	chr9:97138000-97149000	Weak transcription	Fetal Intestine Small	intestine
10	chr9:97138200-97162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:97138400-97152800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr9:97138800-97140400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:97138800-97140600	Weak transcription	K562	blood
14	chr9:97138800-97152800	Weak transcription	Hela-S3	cervix
15	chr9:97138800-97168600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:97139000-97159600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:97139600-97141200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr9:97140000-97146400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:97140200-97140400	Enhancers	Psoas Muscle	Psoas
20	chr9:97140200-97140400	Enhancers	GM12878-XiMat	blood
21	chr9:97140200-97141000	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links