The 2.0 version of rSNPBase

Variant report

Variant rs563744033
Chromosome Location chr1:180276395-180276396
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180244200-180278200 Weak transcription HSMMtube muscle
2 chr1:180245200-180282400 Weak transcription Fetal Intestine Large intestine
3 chr1:180245400-180280400 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr1:180247800-180284200 Weak transcription Fetal Thymus thymus
5 chr1:180248800-180276400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr1:180250400-180279800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr1:180250600-180278600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr1:180254400-180280400 Weak transcription Fetal Stomach stomach
9 chr1:180254800-180282400 Weak transcription Fetal Muscle Leg muscle
10 chr1:180257400-180278200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr1:180257400-180278600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:180257600-180289600 Weak transcription Hela-S3 cervix
13 chr1:180257800-180278600 Weak transcription HMEC breast
14 chr1:180257800-180278600 Weak transcription NHEK skin
15 chr1:180257800-180279800 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr1:180257800-180287200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr1:180257800-180296200 Weak transcription Left Ventricle heart
18 chr1:180258400-180285200 Weak transcription Ovary ovary
19 chr1:180259000-180278600 Weak transcription Brain Cingulate Gyrus brain
20 chr1:180261200-180284200 Weak transcription K562 blood
21 chr1:180262800-180280000 Weak transcription Primary B cells from cord blood blood
22 chr1:180264000-180278800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:180265600-180277600 Weak transcription HepG2 liver
24 chr1:180267000-180284400 Weak transcription GM12878-XiMat blood
25 chr1:180268200-180282800 Weak transcription Primary T helper naive cells fromperipheralblood blood
26 chr1:180269000-180278200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:180269000-180278600 Weak transcription HSMM muscle
28 chr1:180269200-180282000 Weak transcription Pancreatic Islets Pancreatic Islet
29 chr1:180271000-180278400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr1:180271000-180278600 Weak transcription NHLF lung
31 chr1:180271200-180277400 Weak transcription A549 lung
32 chr1:180271600-180284600 Weak transcription Primary T helper cells fromperipheralblood blood
33 chr1:180274600-180281600 Weak transcription Fetal Brain Male brain
34 chr1:180275000-180276600 ZNF genes & repeats Primary hematopoietic stem cells blood
35 chr1:180275000-180280600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr1:180275400-180276400 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
37 chr1:180275400-180276600 ZNF genes & repeats Dnd41 blood
38 chr1:180275600-180276400 ZNF genes & repeats Fetal Lung lung
39 chr1:180276000-180276400 ZNF genes & repeats Primary B cells from peripheral blood blood
40 chr1:180276000-180276400 ZNF genes & repeats Primary T killer naive cells fromperipheralblood blood
41 chr1:180276200-180276600 ZNF genes & repeats Primary T cells from cord blood blood
42 chr1:180276200-180280400 Weak transcription Liver Liver
43 chr1:180276200-180283800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015