Variant report

Variant	rs563753857
Chromosome Location	chr2:210660803-210660804
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210638200-210661400	Weak transcription	Fetal Brain Female	brain
2	chr2:210651200-210662000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
4	chr2:210652400-210681000	Weak transcription	Brain Anterior Caudate	brain
5	chr2:210659400-210663400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:210660200-210661200	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:210660200-210661200	Strong transcription	Brain Germinal Matrix	brain
8	chr2:210660200-210662200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:210660800-210662400	Strong transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:210660800-210662600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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