Variant report

Variant	rs56375933
Chromosome Location	chr1:209520924-209520925
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1395750	0.87[EUR][1000 genomes]
rs1542981	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17188128	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17188142	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2245283	0.86[EUR][1000 genomes]
rs2245287	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2489649	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2489650	0.86[EUR][1000 genomes]
rs6700119	0.93[EUR][1000 genomes]
rs72756413	0.86[EUR][1000 genomes]
rs72756439	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72756445	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209506200-209524600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:209515800-209522800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:209515800-209524200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:209516800-209522600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:209517200-209522600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:209517600-209522600	Weak transcription	Fetal Heart	heart
7	chr1:209517800-209522200	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:209517800-209522800	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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