Variant report

Variant	rs563766055
Chromosome Location	chr14:66061210-66061211
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:66060976..66063420-chr14:66066312..66068203,2	MCF-7	breast:
2	chr14:65877765..65881174-chr14:66059720..66062565,3	MCF-7	breast:
3	chr14:66049169..66051440-chr14:66059588..66062985,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66058200-66079000	Weak transcription	Primary T cells from cord blood	blood
2	chr14:66058600-66070600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:66059200-66062800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:66059200-66082600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:66060800-66061400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr14:66060800-66061400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
7	chr14:66060800-66061400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr14:66060800-66061400	Enhancers	Duodenum Mucosa	Duodenum
9	chr14:66060800-66061400	Enhancers	Left Ventricle	heart
10	chr14:66060800-66061400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr14:66060800-66061400	ZNF genes & repeats	Thymus	Thymus
12	chr14:66060800-66061400	Flanking Active TSS	A549	lung
13	chr14:66060800-66061400	Flanking Active TSS	HepG2	liver
14	chr14:66060800-66061600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:66060800-66061600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr14:66060800-66061600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr14:66060800-66061600	Enhancers	Liver	Liver
18	chr14:66060800-66061600	Enhancers	Brain Substantia Nigra	brain
19	chr14:66060800-66061600	Enhancers	Right Ventricle	heart
20	chr14:66060800-66061800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:66060800-66061800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr14:66060800-66061800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:66060800-66061800	Enhancers	Adipose Nuclei	Adipose
24	chr14:66060800-66061800	Enhancers	Pancreas	Pancrea
25	chr14:66060800-66061800	ZNF genes & repeats	Dnd41	blood
26	chr14:66060800-66061800	ZNF genes & repeats	GM12878-XiMat	blood
27	chr14:66060800-66062000	Strong transcription	Primary B cells from cord blood	blood
28	chr14:66061000-66061400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr14:66061000-66061400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr14:66061000-66061400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:66061000-66061400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:66061000-66061400	Enhancers	Primary T cells fromperipheralblood	blood
33	chr14:66061000-66061400	Enhancers	Brain Hippocampus Middle	brain
34	chr14:66061000-66061400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr14:66061000-66061400	Enhancers	Colonic Mucosa	Colon
36	chr14:66061000-66061600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:66061000-66061600	Enhancers	Esophagus	oesophagus
38	chr14:66061000-66061600	Enhancers	Gastric	stomach
39	chr14:66061000-66061600	Enhancers	Lung	lung
40	chr14:66061000-66061600	Enhancers	Right Atrium	heart
41	chr14:66061000-66061600	Enhancers	Stomach Mucosa	stomach
42	chr14:66061000-66061800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr14:66061000-66061800	ZNF genes & repeats	Fetal Intestine Small	intestine
44	chr14:66061200-66061400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr14:66061200-66061600	Enhancers	Brain Cingulate Gyrus	brain
46	chr14:66061200-66061600	Enhancers	Sigmoid Colon	Sigmoid Colon

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