Variant report

Variant	rs563766358
Chromosome Location	chr6:114285822-114285823
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114281941..114287220-chr6:114288215..114294270,10	MCF-7	breast:
2	chr6:114178671..114180639-chr6:114284210..114286994,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228624	Chromatin interaction
ENSG00000196591	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv520419	chr6:114285253-114306614	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114253000-114289800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:114253400-114290600	Weak transcription	Aorta	Aorta
3	chr6:114258600-114291000	Weak transcription	Lung	lung
4	chr6:114258800-114289800	Weak transcription	Spleen	Spleen
5	chr6:114259000-114289200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:114264800-114289800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:114266000-114289600	Weak transcription	Esophagus	oesophagus
8	chr6:114266400-114289800	Weak transcription	Pancreas	Pancrea
9	chr6:114267400-114286200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:114267400-114287200	Weak transcription	Fetal Brain Male	brain
11	chr6:114267400-114288800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:114267400-114289000	Weak transcription	Brain Angular Gyrus	brain
13	chr6:114267400-114289200	Weak transcription	Ovary	ovary
14	chr6:114267400-114289800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:114270400-114289800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:114273600-114289200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:114275400-114289200	Weak transcription	Left Ventricle	heart
18	chr6:114275800-114286000	Weak transcription	Primary T cells from cord blood	blood
19	chr6:114276000-114289200	Weak transcription	A549	lung
20	chr6:114276000-114289200	Weak transcription	HMEC	breast
21	chr6:114276000-114289400	Weak transcription	NHEK	skin
22	chr6:114276000-114289800	Weak transcription	NHLF	lung
23	chr6:114276800-114289000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:114277000-114288400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:114277000-114288600	Weak transcription	Fetal Intestine Small	intestine
26	chr6:114277000-114289200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:114277000-114289200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:114277000-114289400	Weak transcription	Fetal Stomach	stomach
29	chr6:114277000-114289800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:114277200-114289000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:114277200-114289200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:114277400-114288800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:114277400-114288800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:114277400-114289600	Weak transcription	Thymus	Thymus
35	chr6:114277400-114290200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:114277600-114289800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:114277800-114289800	Weak transcription	HSMMtube	muscle
38	chr6:114278000-114289200	Weak transcription	Liver	Liver
39	chr6:114278200-114288200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:114278600-114288200	Weak transcription	Fetal Kidney	kidney
41	chr6:114278600-114289800	Weak transcription	Placenta	Placenta
42	chr6:114278800-114289800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:114279000-114289200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:114279000-114289800	Weak transcription	Brain Anterior Caudate	brain
45	chr6:114279400-114289200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:114279400-114289400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:114279600-114288600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr6:114279600-114288600	Weak transcription	HepG2	liver
49	chr6:114279600-114289000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:114279600-114289000	Weak transcription	Adipose Nuclei	Adipose

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