Variant report

Variant	rs563781662
Chromosome Location	chr11:94277274-94277275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr11:94276813-94277474	A549	lung:	n/a	n/a
2	POLR2A	chr11:94276828-94277941	MCF-7	breast:	n/a	n/a
3	ESR1	chr11:94277256-94277587	T-47D	breast:	n/a	n/a
4	TFAP2A	chr11:94276920-94277740	Hela-S3	cervix:	n/a	chr11:94277327-94277342
5	PAX5	chr11:94277223-94277706	GM12878	blood:	n/a	n/a
6	MAX	chr11:94276463-94278246	HCT-116	colon:	n/a	chr11:94276987-94276997
7	TCF12	chr11:94276984-94277426	GM12878	blood:	n/a	n/a
8	MAZ	chr11:94276727-94278176	K562	blood:	n/a	chr11:94276987-94276997
9	RELA	chr11:94276144-94277715	GM19193	blood:	n/a	chr11:94276320-94276329 chr11:94276320-94276329
10	ZBTB33	chr11:94277151-94277581	HCT-116	colon:	n/a	n/a
11	POLR2A	chr11:94276783-94277700	K562	blood:	n/a	n/a
12	MAX	chr11:94276783-94277944	GM12878	blood:	n/a	chr11:94276987-94276997
13	POLR2A	chr11:94276731-94278094	GM18526	blood:	n/a	n/a
14	TAF1	chr11:94276871-94277762	K562	blood:	n/a	n/a
15	TBP	chr11:94276825-94277950	H1-hESC	embryonic stem cell:	n/a	n/a
16	EGR1	chr11:94276672-94277794	HCT-116	colon:	n/a	chr11:94277352-94277366 chr11:94276961-94276971
17	ETS1	chr11:94277234-94277532	A549	lung:	n/a	n/a
18	YY1	chr11:94277240-94277875	K562	blood:	n/a	n/a
19	POLR2A	chr11:94276324-94278276	GM19193	blood:	n/a	n/a
20	TFAP2C	chr11:94276919-94277848	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr11:94276618-94277929	K562	blood:	n/a	n/a
22	POLR2A	chr11:94276856-94277642	H1-neurons	neurons:	n/a	n/a
23	GABPA	chr11:94276776-94277561	HL-60	blood:	n/a	n/a
24	TAF7	chr11:94276943-94277563	H1-hESC	embryonic stem cell:	n/a	n/a
25	MAX	chr11:94276666-94278264	K562	blood:	n/a	chr11:94276987-94276997
26	NFIC	chr11:94276887-94277830	ECC-1	luminal epithelium:	n/a	n/a
27	SRF	chr11:94276791-94277467	ECC-1	luminal epithelium:	n/a	n/a
28	GABPA	chr11:94276878-94277412	MCF-7	breast:	n/a	n/a
29	TCF12	chr11:94276928-94277691	ECC-1	luminal epithelium:	n/a	n/a
30	POLR2A	chr11:94276533-94279695	HL-60	blood:	n/a	n/a
31	POLR2A	chr11:94276761-94277844	ECC-1	luminal epithelium:	n/a	n/a
32	ZBTB7A	chr11:94276956-94277723	ECC-1	luminal epithelium:	n/a	chr11:94277243-94277254
33	MXI1	chr11:94277206-94277577	Hela-S3	cervix:	n/a	n/a
34	E2F6	chr11:94276833-94278318	K562	blood:	n/a	chr11:94277003-94277014 chr11:94277092-94277102
35	SIN3A	chr11:94276651-94278975	H1-hESC	embryonic stem cell:	n/a	n/a
36	TBP	chr11:94276737-94278119	K562	blood:	n/a	n/a
37	POLR2A	chr11:94276767-94278145	GM12892	blood:	n/a	n/a
38	SP1	chr11:94277264-94277672	GM12878	blood:	n/a	n/a
39	POLR2A	chr11:94276820-94277609	GM12878	blood:	n/a	n/a
40	REST	chr11:94276772-94277886	HL-60	blood:	n/a	n/a
41	SIN3AK20	chr11:94277273-94277747	K562	blood:	n/a	n/a
42	HMGN3	chr11:94276810-94278323	K562	blood:	n/a	n/a
43	MAX	chr11:94276750-94277741	HepG2	liver:	n/a	chr11:94276987-94276997
44	POLR2A	chr11:94276756-94277830	GM12891	blood:	n/a	n/a
45	ELF1	chr11:94276774-94277839	GM12878	blood:	n/a	chr11:94276988-94277000 chr11:94276959-94276971
46	POLR2A	chr11:94276994-94277770	Hela-S3	cervix:	n/a	n/a
47	HEY1	chr11:94277230-94277614	HepG2	liver:	n/a	n/a
48	CHD1	chr11:94276766-94277340	GM12878	blood:	n/a	n/a
49	USF1	chr11:94276843-94277746	ECC-1	luminal epithelium:	n/a	chr11:94276897-94276913
50	POLR2A	chr11:94276650-94278012	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:94277201..94277899-chr3:150421042..150421878,2	NB4	blood:
2	chr11:94225466..94228271-chr11:94275709..94278301,3	K562	blood:
3	chr11:94226771..94229140-chr11:94275887..94279295,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MRE11A-3	chr11:94276131-94277949	NONHSAT023724

Variant related genes	Relation type
PIWIL4	TF binding region
ENSG00000240137	Chromatin interaction
ENSG00000168876	Chromatin interaction
ENSG00000163645	Chromatin interaction
ENSG00000020922	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390466	chr11:94276729-94279277	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94276200-94277800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:94276400-94277600	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr11:94276400-94279200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr11:94276400-94279200	Active TSS	Brain Substantia Nigra	brain
5	chr11:94276400-94279600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:94276400-94280000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr11:94276600-94277400	Flanking Active TSS	Placenta Amnion	Placenta Amnion
8	chr11:94276600-94277400	Flanking Active TSS	NH-A	brain
9	chr11:94276600-94277800	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:94276600-94277800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:94276600-94278000	Active TSS	Right Ventricle	heart
12	chr11:94276600-94278200	Active TSS	Pancreas	Pancrea
13	chr11:94276600-94278200	Active TSS	Right Atrium	heart
14	chr11:94276600-94278200	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr11:94276600-94278200	Active TSS	A549	lung
16	chr11:94276600-94278400	Active TSS	Fetal Brain Female	brain
17	chr11:94276600-94278600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:94276600-94278600	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr11:94276600-94278600	Active TSS	Psoas Muscle	Psoas
20	chr11:94276600-94278600	Active TSS	NHLF	lung
21	chr11:94276600-94279200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:94276600-94279200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:94276600-94279400	Active TSS	Hela-S3	cervix
24	chr11:94276600-94279600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
25	chr11:94276600-94279600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:94276600-94281000	Active TSS	Aorta	Aorta
27	chr11:94276800-94277400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:94276800-94277400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:94276800-94277400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:94276800-94277400	Flanking Active TSS	HMEC	breast
31	chr11:94276800-94277600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:94276800-94277800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr11:94276800-94277800	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr11:94276800-94277800	Active TSS	Thymus	Thymus
35	chr11:94276800-94278000	Active TSS	H9 Cell Line	embryonic stem cell
36	chr11:94276800-94278000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:94276800-94278000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:94276800-94278000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr11:94276800-94278000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:94276800-94278000	Active TSS	Esophagus	oesophagus
41	chr11:94276800-94278000	Active TSS	Left Ventricle	heart
42	chr11:94276800-94278000	Active TSS	Stomach Smooth Muscle	stomach
43	chr11:94276800-94278000	Active TSS	Spleen	Spleen
44	chr11:94276800-94278200	Active TSS	Primary T killer memory cells from peripheral blood	blood
45	chr11:94276800-94278200	Active TSS	Fetal Lung	lung
46	chr11:94276800-94278200	Active TSS	Ovary	ovary
47	chr11:94276800-94278400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:94276800-94278400	Active TSS	Brain Angular Gyrus	brain
49	chr11:94276800-94278600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:94276800-94278600	Active TSS	Brain Anterior Caudate	brain

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