Variant report

Variant	rs563783794
Chromosome Location	chr17:16097748-16097749
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv833377	chr17:15912013-16104515	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv522169	chr17:15923709-16147821	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv907712	chr17:15981874-16103426	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv907713	chr17:15981874-16127206	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
9	nsv907714	chr17:15990013-16110384	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv907715	chr17:16019978-16206540	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
11	nsv907716	chr17:16068422-16116835	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv907717	chr17:16076898-16239832	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
13	nsv907718	chr17:16080849-16143709	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
14	nsv960423	chr17:16089865-16112673	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv528263	chr17:16097430-16196996	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16035800-16103400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr17:16049200-16103400	Weak transcription	Spleen	Spleen
3	chr17:16049200-16108600	Weak transcription	Esophagus	oesophagus
4	chr17:16052200-16100400	Weak transcription	Ovary	ovary
5	chr17:16055200-16102600	Weak transcription	Brain Angular Gyrus	brain
6	chr17:16055400-16104000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr17:16055800-16102000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr17:16059400-16102400	Weak transcription	Small Intestine	intestine
9	chr17:16059400-16102400	Weak transcription	NHLF	lung
10	chr17:16059400-16102800	Weak transcription	Pancreas	Pancrea
11	chr17:16064000-16101000	Weak transcription	Lung	lung
12	chr17:16064600-16106000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr17:16084800-16098000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr17:16086000-16098000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr17:16086600-16101600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr17:16086600-16102400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr17:16086800-16102200	Weak transcription	Stomach Mucosa	stomach
18	chr17:16087200-16098000	Strong transcription	Fetal Intestine Large	intestine
19	chr17:16087200-16108200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:16088000-16117000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr17:16088200-16101800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr17:16088200-16102200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr17:16088200-16116200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr17:16088600-16101200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr17:16089400-16103400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr17:16089400-16104000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr17:16089600-16104400	Weak transcription	HSMMtube	muscle
28	chr17:16089600-16114600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr17:16090000-16100200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:16090000-16116800	Weak transcription	NH-A	brain
31	chr17:16090400-16102600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr17:16090400-16105200	Weak transcription	Colonic Mucosa	Colon
33	chr17:16091200-16098600	Strong transcription	HepG2	liver
34	chr17:16091800-16099200	Strong transcription	Placenta	Placenta
35	chr17:16092000-16097800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr17:16092000-16098000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr17:16092000-16103400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr17:16092400-16098000	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr17:16092400-16098000	Strong transcription	Fetal Muscle Trunk	muscle
40	chr17:16092400-16102400	Weak transcription	Right Atrium	heart
41	chr17:16092600-16098000	Strong transcription	Fetal Thymus	thymus
42	chr17:16092800-16098000	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr17:16092800-16098000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr17:16092800-16098000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr17:16092800-16098000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr17:16092800-16098000	Strong transcription	Liver	Liver
47	chr17:16092800-16098200	Strong transcription	Osteobl	bone
48	chr17:16092800-16099200	Strong transcription	Dnd41	blood
49	chr17:16093000-16097800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr17:16093000-16097800	Strong transcription	Fetal Muscle Leg	muscle

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