Variant report

Variant	rs563790203
Chromosome Location	chr17:46628243-46628244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr17:46627753-46629911	NT2-D1	testis:	n/a	n/a
2	POLR2A	chr17:46620117-46628421	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr17:46616545-46629919	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr17:46627423-46628340	K562	blood:	n/a	n/a
5	POLR2A	chr17:46627990-46628287	MCF-7	breast:	n/a	n/a
6	CTCF	chr17:46628230-46628291	GM13976	blood:	n/a	n/a
7	POLR2A	chr17:46627282-46629902	K562	blood:	n/a	n/a
8	POLR2A	chr17:46622500-46628313	K562	blood:	n/a	n/a
9	SUZ12	chr17:46627501-46628367	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr17:46627283-46628263	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:46628224-46628274	HCF	heart:	n/a
2	chr17:46628224-46628274	MCF-7	breast:	n/a
3	chr17:46628224-46628274	HPAEpiC	pulmonary alveolar:	n/a
4	chr17:46628224-46628274	HMEC	breast:	n/a
5	chr17:46628224-46628274	SK-N-SH	brain:	n/a
6	chr17:46628224-46628274	NB4	blood:	n/a
7	chr17:46628224-46628274	PANC-1	pancreas:	n/a
8	chr17:46628224-46628274	NH-A	brain:	n/a
9	chr17:46628224-46628274	Caco-2	colon:	n/a
10	chr17:46628224-46628274	AG09309	skin:	n/a
11	chr17:46628224-46628274	Jurkat	blood:	n/a
12	chr17:46628224-46628274	NHDF-neo	bronchial:	n/a
13	chr17:46628224-46628274	HEEpiC	esophagus:	n/a
14	chr17:46628224-46628274	NHBE	bronchial:	n/a
15	chr17:46628224-46628274	HepG2	liver:	n/a
16	chr17:46628224-46628274	HCM	heart:	n/a
17	chr17:46628224-46628274	BJ	skin:	n/a
18	chr17:46628224-46628274	NT2-D1	testis:	n/a
19	chr17:46628224-46628274	SK-N-SH_RA	brain:	n/a
20	chr17:46628224-46628274	BE2_C	brain:	n/a
21	chr17:46628224-46628274	H1-hESC	embryonic stem cell:	embryo
22	chr17:46628224-46628274	HEK293	kidney:	embryo
23	chr17:46628224-46628274	HNPCEpiC	eye:	n/a
24	chr17:46628224-46628274	GM06990	blood:	n/a
25	chr17:46628224-46628274	AG04449	skin:	fetal
26	chr17:46628224-46628274	U87	brain:	n/a
27	chr17:46628224-46628274	IMR90	lung:	fetal
28	chr17:46628224-46628274	HAEpiC	amniotic membrane:	n/a
29	chr17:46628224-46628274	PFSK-1	brain:	n/a
30	chr17:46628224-46628274	HIPEpiC	eye:	n/a
31	chr17:46628224-46628274	HRE	kidney:	n/a
32	chr17:46628224-46628274	MCF10A-Er-Src	breast:	n/a
33	chr17:46628224-46628274	GM12878	blood:	n/a
34	chr17:46628224-46628274	GM12891	blood:	n/a
35	chr17:46628224-46628274	T-47D	breast:	n/a
36	chr17:46628224-46628274	SKMC	muscle:	n/a
37	chr17:46628224-46628274	Hela-S3	cervix:	n/a
38	chr17:46628224-46628274	K562	blood:	n/a
39	chr17:46628224-46628274	HRCEpiC	kidney:	n/a
40	chr17:46628224-46628274	A549	lung:	n/a
41	chr17:46628224-46628274	Hepatocyte	liver:	n/a
42	chr17:46628224-46628274	HCT-116	colon:	n/a
43	chr17:46628224-46628274	ovcar-3	ovarian:	n/a
44	chr17:46628224-46628274	SK-N-MC	brain:	n/a
45	chr17:46628224-46628274	ECC-1	luminal epithelium:	n/a
46	chr17:46628224-46628274	LNCaP	prostate:	n/a
47	chr17:46628224-46628274	AoSMC	blood vessel:	n/a
48	chr17:46628224-46628274	AG10803	skin:	n/a
49	chr17:46628224-46628274	HUVEC	blood vessel:	n/a
50	chr17:46628224-46628274	HCPEpiC	choroid plexus:	n/a

No data

Variant related genes	Relation type
HOXB2	TF binding region
HOXB2	CpG island

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases
3	nsv908577	chr17:46584900-46704536	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	343 gene(s)	inside rSNPs	diseases
4	nsv908578	chr17:46592413-46698710	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	335 gene(s)	inside rSNPs	diseases
5	nsv908579	chr17:46592413-46727289	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
6	nsv532113	chr17:46598247-47588570	Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	453 gene(s)	inside rSNPs	diseases
7	esv2758459	chr17:46602673-46836837	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	364 gene(s)	inside rSNPs	diseases
8	esv2758694	chr17:46602673-46836837	Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	364 gene(s)	inside rSNPs	diseases
9	nsv908580	chr17:46609103-46698710	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	335 gene(s)	inside rSNPs	diseases
10	nsv908581	chr17:46610646-46735520	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
11	nsv575480	chr17:46617019-46684929	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
12	nsv908582	chr17:46617019-46698710	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
13	nsv908583	chr17:46617019-46704536	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	342 gene(s)	inside rSNPs	diseases
14	nsv833471	chr17:46617787-46783345	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	356 gene(s)	inside rSNPs	diseases
15	nsv908584	chr17:46618926-46735520	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
16	nsv457822	chr17:46620402-46698710	Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
17	nsv575481	chr17:46620402-46698710	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
18	nsv457823	chr17:46620402-46704536	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	342 gene(s)	inside rSNPs	diseases
19	nsv575482	chr17:46620402-46704536	Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	342 gene(s)	inside rSNPs	diseases
20	nsv457824	chr17:46625519-46693491	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
21	nsv575483	chr17:46625519-46693491	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
22	esv3333737	chr17:46627753-46629651	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46621200-46629600	Weak transcription	Gastric	stomach
2	chr17:46621600-46634400	Weak transcription	Hela-S3	cervix
3	chr17:46623800-46630800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:46624000-46629800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr17:46624600-46631600	Weak transcription	Esophagus	oesophagus
6	chr17:46625600-46629600	Weak transcription	GM12878-XiMat	blood
7	chr17:46625600-46630200	Genic enhancers	Fetal Stomach	stomach
8	chr17:46625600-46631600	Weak transcription	Right Atrium	heart
9	chr17:46626200-46631600	Weak transcription	Aorta	Aorta
10	chr17:46626200-46631800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:46626400-46629000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr17:46626400-46632200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:46626400-46632600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr17:46626400-46633200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr17:46626600-46632400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr17:46626800-46629600	Strong transcription	Adipose Nuclei	Adipose
17	chr17:46626800-46630200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr17:46626800-46632600	Transcr. at gene 5' and 3'	NHLF	lung
19	chr17:46627000-46628600	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr17:46627000-46628600	Bivalent Enhancer	Fetal Lung	lung
21	chr17:46627000-46630200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr17:46627200-46628400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
23	chr17:46627200-46629800	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr17:46627200-46632200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr17:46627400-46628400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr17:46627400-46628400	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
27	chr17:46627400-46629600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr17:46627400-46630200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr17:46627400-46630600	Strong transcription	HUVEC	blood vessel
30	chr17:46627400-46637600	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr17:46627600-46628400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr17:46627600-46628400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
33	chr17:46627600-46628400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr17:46627600-46628400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
35	chr17:46627600-46628400	Bivalent Enhancer	Stomach Mucosa	stomach
36	chr17:46627600-46629400	Genic enhancers	Rectal Smooth Muscle	rectum
37	chr17:46627600-46629800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr17:46627600-46629800	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr17:46627600-46630000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
40	chr17:46627800-46628400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
41	chr17:46627800-46628400	Bivalent Enhancer	Fetal Muscle Leg	muscle
42	chr17:46627800-46628400	Strong transcription	Spleen	Spleen
43	chr17:46627800-46629400	Strong transcription	Colonic Mucosa	Colon
44	chr17:46627800-46629400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr17:46627800-46629600	Weak transcription	Fetal Kidney	kidney
46	chr17:46627800-46629800	Strong transcription	A549	lung
47	chr17:46627800-46630200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr17:46627800-46630200	Weak transcription	K562	blood
49	chr17:46627800-46630600	Weak transcription	HSMM	muscle
50	chr17:46628000-46628400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast

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