Variant report

Variant	rs563797399
Chromosome Location	chr15:82334875-82334876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr15:82334810-82340509	SK-N-SH	brain:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:82095888..82097859-chr15:82332803..82335499,2	K562	blood:
2	chr15:82251555..82253292-chr15:82333224..82334972,2	MCF-7	breast:
3	chr15:82333925..82335787-chr15:82348964..82351774,2	MCF-7	breast:
4	chr15:82330594..82336594-chr15:82336813..82340577,9	K562	blood:
5	chr15:82332579..82335110-chr15:82342435..82344275,2	K562	blood:
6	chr15:82333605..82336369-chr15:82346217..82348896,2	MCF-7	breast:
7	chr15:82299760..82303058-chr15:82332264..82335755,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000222521	TF binding region
ENSG00000183496	Chromatin interaction
ENSG00000259622	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv827415	chr15:82333348-82340769	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3344827	chr15:82334647-82340995	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82327400-82335000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:82331400-82335200	Weak transcription	Thymus	Thymus
3	chr15:82332000-82335400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:82332000-82335400	Weak transcription	Spleen	Spleen
5	chr15:82332200-82335600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:82332400-82335400	Weak transcription	HUVEC	blood vessel
7	chr15:82332800-82335000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:82333000-82335400	Weak transcription	Right Ventricle	heart
9	chr15:82333000-82335400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:82333200-82335000	Weak transcription	Fetal Lung	lung
11	chr15:82333200-82335200	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:82333400-82335000	Weak transcription	Fetal Heart	heart
13	chr15:82333400-82335400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:82333400-82335400	Weak transcription	Ovary	ovary
15	chr15:82333400-82335600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:82333400-82335600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:82333400-82336000	Weak transcription	Osteobl	bone
18	chr15:82333600-82335000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:82333600-82335000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:82333600-82335000	Weak transcription	Fetal Thymus	thymus
21	chr15:82333600-82335200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:82333600-82335200	Weak transcription	Fetal Stomach	stomach
23	chr15:82333600-82335400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:82333600-82335400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:82333600-82335400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:82333600-82335400	Weak transcription	Gastric	stomach
27	chr15:82333600-82335400	Weak transcription	Left Ventricle	heart
28	chr15:82333600-82335400	Weak transcription	Pancreas	Pancrea
29	chr15:82333600-82335400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr15:82333600-82335600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr15:82333600-82335600	Weak transcription	Brain Anterior Caudate	brain
32	chr15:82333600-82336400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr15:82333600-82336400	Weak transcription	Right Atrium	heart
34	chr15:82333600-82336600	Weak transcription	Psoas Muscle	Psoas
35	chr15:82333600-82336600	Weak transcription	A549	lung
36	chr15:82333800-82335200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:82333800-82335200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:82333800-82335200	Weak transcription	Fetal Muscle Leg	muscle
39	chr15:82333800-82335200	Strong transcription	NH-A	brain
40	chr15:82333800-82335400	Weak transcription	Dnd41	blood
41	chr15:82333800-82335400	Strong transcription	HSMM	muscle
42	chr15:82334000-82335000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:82334000-82335000	Weak transcription	K562	blood
44	chr15:82334000-82336000	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:82334200-82335400	Weak transcription	NHLF	lung
46	chr15:82334200-82336400	Weak transcription	NHDF-Ad	bronchial
47	chr15:82334200-82336600	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
48	chr15:82334400-82335000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:82334400-82335000	Active TSS	Fetal Brain Male	brain
50	chr15:82334400-82335400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links