Variant report

Variant	rs563806177
Chromosome Location	chr10:26833985-26833986
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3373151	chr10:26833696-26835794	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26780200-26834000	Strong transcription	Dnd41	blood
2	chr10:26780400-26837600	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:26781000-26837400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:26793200-26843200	Strong transcription	Fetal Thymus	thymus
5	chr10:26802200-26839800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:26809200-26834600	Strong transcription	Primary B cells from cord blood	blood
8	chr10:26809200-26844000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:26813800-26837800	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:26814800-26837000	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:26819600-26837000	Weak transcription	Right Atrium	heart
12	chr10:26820600-26834400	Strong transcription	Thymus	Thymus
13	chr10:26820600-26844600	Weak transcription	Pancreas	Pancrea
14	chr10:26823800-26840000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:26825400-26840800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:26826600-26836000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr10:26827200-26839600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:26828000-26836800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:26828800-26835600	Strong transcription	Primary T cells from cord blood	blood
20	chr10:26830000-26845000	Strong transcription	Primary hematopoietic stem cells	blood
21	chr10:26830400-26838000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:26830800-26834200	Strong transcription	Liver	Liver
23	chr10:26830800-26835200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:26831000-26844600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:26831200-26834000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:26832200-26839800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:26832200-26839800	Weak transcription	Lung	lung
28	chr10:26832200-26839800	Weak transcription	Spleen	Spleen
29	chr10:26832400-26834000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:26832600-26834000	Genic enhancers	Primary B cells from peripheral blood	blood
31	chr10:26832600-26834000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
32	chr10:26832800-26834200	Genic enhancers	Monocytes-CD14+_RO01746	blood
33	chr10:26833000-26834000	Genic enhancers	Primary monocytes fromperipheralblood	blood
34	chr10:26833000-26834000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:26833000-26834200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:26833200-26837400	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr10:26833400-26834000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr10:26833400-26834000	Genic enhancers	Adipose Nuclei	Adipose
39	chr10:26833400-26836200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:26833600-26834000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:26833600-26834400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:26833600-26839800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:26833800-26835800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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