Variant report

Variant	rs56380708
Chromosome Location	chr3:135509639-135509640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16843365	0.88[EUR][1000 genomes]
rs1878993	0.88[EUR][1000 genomes]
rs2176666	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57767257	0.88[EUR][1000 genomes]
rs57895104	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59165430	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60349283	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61789012	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61789017	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61789024	0.88[EUR][1000 genomes]
rs61789025	0.82[EUR][1000 genomes]
rs61789026	0.86[EUR][1000 genomes]
rs6786217	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73863014	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135502000-135511200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:135509600-135510200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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