Variant report

Variant	rs56381015
Chromosome Location	chr5:75333562-75333563
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56342638	1.00[AMR][1000 genomes]
rs57680998	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59554385	1.00[AMR][1000 genomes]
rs60676308	1.00[AMR][1000 genomes]
rs73764008	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75333000-75334400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:75333400-75333600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:75333400-75333800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:75333400-75333800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:75333400-75334000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr5:75333400-75334000	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr5:75333400-75334000	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr5:75333400-75334000	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr5:75333400-75334000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:75333400-75334000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr5:75333400-75334200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr5:75333400-75334200	Active TSS	H1 Cell Line	embryonic stem cell
13	chr5:75333400-75334200	Active TSS	H9 Cell Line	embryonic stem cell
14	chr5:75333400-75334200	Active TSS	Duodenum Mucosa	Duodenum
15	chr5:75333400-75334200	Active TSS	Rectal Mucosa Donor 31	rectum
16	chr5:75333400-75334400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr5:75333400-75334400	Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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