The 2.0 version of rSNPBase

Variant report

Variant rs563819372
Chromosome Location chr1:62931868-62931869
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62904200-62940000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:62909800-62977000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:62910200-62936000 Weak transcription Aorta Aorta
4 chr1:62911600-62938000 Weak transcription Placenta Amnion Placenta Amnion
5 chr1:62914400-62935400 Weak transcription Brain Substantia Nigra brain
6 chr1:62915400-62940800 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr1:62915400-62966600 Weak transcription Primary T cells fromperipheralblood blood
8 chr1:62915800-62937000 Weak transcription Esophagus oesophagus
9 chr1:62916000-62940800 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr1:62916000-62977200 Weak transcription Right Ventricle heart
11 chr1:62916200-62960000 Weak transcription Spleen Spleen
12 chr1:62916200-62963200 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr1:62916400-62936000 Weak transcription Left Ventricle heart
14 chr1:62916400-62940800 Weak transcription Fetal Heart heart
15 chr1:62916400-62941400 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr1:62916600-62935800 Weak transcription Primary T killer memory cells from peripheral blood blood
17 chr1:62916600-62937000 Weak transcription Colonic Mucosa Colon
18 chr1:62916600-62976600 Weak transcription Psoas Muscle Psoas
19 chr1:62916800-62935800 Weak transcription Colon Smooth Muscle Colon
20 chr1:62917000-62941200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr1:62917200-62940800 Weak transcription NHEK skin
22 chr1:62917400-62940200 Weak transcription Primary T regulatory cells fromperipheralblood blood
23 chr1:62918800-62950000 Weak transcription GM12878-XiMat blood
24 chr1:62918800-62950800 Weak transcription K562 blood
25 chr1:62919000-62959200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr1:62919400-62935800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr1:62919400-62935800 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr1:62919400-62937000 Weak transcription H1 Cell Line embryonic stem cell
29 chr1:62919400-62940800 Weak transcription NHLF lung
30 chr1:62919800-62937000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr1:62920000-62936200 Weak transcription Gastric stomach
32 chr1:62920000-62937000 Weak transcription Pancreas Pancrea
33 chr1:62920000-62971000 Weak transcription Thymus Thymus
34 chr1:62920000-62980200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr1:62920200-62934800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr1:62920600-62932000 Weak transcription Fetal Kidney kidney
37 chr1:62920600-62936000 Weak transcription Rectal Smooth Muscle rectum
38 chr1:62920600-62939600 Weak transcription Primary T helper cells fromperipheralblood blood
39 chr1:62921000-62936000 Weak transcription Primary B cells from cord blood blood
40 chr1:62921200-62935600 Weak transcription HUES6 Cell Line embryonic stem cell
41 chr1:62921400-62940000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
42 chr1:62921800-62934400 Weak transcription Brain Hippocampus Middle brain
43 chr1:62921800-62935400 Weak transcription iPS-20b Cell Line embryonic stem cell
44 chr1:62922200-62940800 Weak transcription HUES48 Cell Line embryonic stem cell
45 chr1:62922400-62935600 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr1:62922600-62937600 Weak transcription HMEC breast
47 chr1:62922600-62982000 Weak transcription A549 lung
48 chr1:62923200-62938400 Weak transcription iPS-18 Cell Line embryonic stem cell
49 chr1:62923200-62979200 Weak transcription Fetal Thymus thymus
50 chr1:62923400-62938400 Weak transcription Placenta Placenta

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Last update: Aug 31, 2015