Variant report

Variant	rs56382032
Chromosome Location	chr4:151000419-151000420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12498375	0.82[ASN][1000 genomes]
rs12501667	0.82[ASN][1000 genomes]
rs4260524	0.82[ASN][1000 genomes]
rs4260525	0.82[ASN][1000 genomes]
rs4274824	0.82[ASN][1000 genomes]
rs4274825	0.82[ASN][1000 genomes]
rs4557242	0.80[ASN][1000 genomes]
rs4622980	0.82[ASN][1000 genomes]
rs56080313	0.82[ASN][1000 genomes]
rs56896627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62338174	0.80[ASN][1000 genomes]
rs62338175	0.82[ASN][1000 genomes]
rs62338176	0.82[ASN][1000 genomes]
rs62338177	0.82[ASN][1000 genomes]
rs62338178	0.82[ASN][1000 genomes]
rs62338180	0.82[ASN][1000 genomes]
rs62338181	0.82[ASN][1000 genomes]
rs62338183	0.82[ASN][1000 genomes]
rs62339889	0.90[ASN][1000 genomes]
rs62339915	0.95[ASN][1000 genomes]
rs72965546	0.82[ASN][1000 genomes]
rs7438351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7667241	0.82[ASN][1000 genomes]
rs7667342	0.82[ASN][1000 genomes]
rs7688261	0.82[ASN][1000 genomes]
rs7695751	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3325727	chr4:150998027-151001275	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
8	esv3379698	chr4:150998652-151001000	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150998400-151001800	Active TSS	Fetal Kidney	kidney
2	chr4:150998400-151002400	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr4:150998600-151002600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:150998800-151000600	Active TSS	Fetal Lung	lung
5	chr4:150998800-151000800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr4:150998800-151000800	Active TSS	Right Ventricle	heart
7	chr4:150998800-151000800	Active TSS	Osteobl	bone
8	chr4:150998800-151001000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr4:150998800-151001000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr4:150998800-151001000	Active TSS	Ovary	ovary
11	chr4:150998800-151001000	Active TSS	NHDF-Ad	bronchial
12	chr4:150998800-151001200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
13	chr4:150998800-151001200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr4:150998800-151001200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
15	chr4:150998800-151001200	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr4:150998800-151001200	Active TSS	Right Atrium	heart
17	chr4:150998800-151001400	Active TSS	NHLF	lung
18	chr4:150998800-151001600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:150998800-151001600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:150998800-151002200	Active TSS	Brain Substantia Nigra	brain
21	chr4:150998800-151002600	Active TSS	Brain Angular Gyrus	brain
22	chr4:150998800-151002600	Active TSS	Brain Anterior Caudate	brain
23	chr4:150999000-151000600	Active TSS	H9 Cell Line	embryonic stem cell
24	chr4:150999000-151000600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:150999000-151000600	Active TSS	Muscle Satellite Cultured Cells	--
26	chr4:150999000-151000600	Active TSS	Left Ventricle	heart
27	chr4:150999000-151000800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:150999000-151000800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr4:150999000-151000800	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr4:150999000-151000800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr4:150999000-151000800	Active TSS	Psoas Muscle	Psoas
32	chr4:150999000-151000800	Active TSS	Hela-S3	cervix
33	chr4:150999000-151001000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:150999000-151001000	Active TSS	Aorta	Aorta
35	chr4:150999000-151001000	Active TSS	Colon Smooth Muscle	Colon
36	chr4:150999000-151001000	Active TSS	Fetal Brain Female	brain
37	chr4:150999000-151001000	Active TSS	Lung	lung
38	chr4:150999000-151001000	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr4:150999000-151001600	Active TSS	HSMM	muscle
40	chr4:150999000-151001600	Active TSS	HSMMtube	muscle
41	chr4:150999000-151001800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:150999000-151002000	Active TSS	Rectal Smooth Muscle	rectum
43	chr4:150999000-151002600	Active TSS	Brain Cingulate Gyrus	brain
44	chr4:150999000-151002600	Active TSS	Brain Hippocampus Middle	brain
45	chr4:150999000-151002600	Active TSS	A549	lung
46	chr4:150999000-151003600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr4:150999200-151000600	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr4:150999200-151000600	Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr4:150999200-151000600	Active TSS	Stomach Smooth Muscle	stomach
50	chr4:150999200-151000800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell

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