Variant report

Variant	rs56383925
Chromosome Location	chr3:46634849-46634850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1520491	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17221605	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17287344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806705	0.83[ASN][1000 genomes]
rs57865489	0.89[ASN][1000 genomes]
rs939414	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46627200-46637000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:46628800-46651000	Weak transcription	Right Atrium	heart
3	chr3:46634600-46635000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:46634600-46636000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:46634800-46635000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
6	chr3:46634800-46635000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr3:46634800-46635400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:46634800-46650800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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