Variant report

Variant	rs563843375
Chromosome Location	chr4:84490571-84490572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829994	chr4:84366299-84558316	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv964299	chr4:84490085-84499608	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84481200-84503200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:84482800-84503400	Weak transcription	Ovary	ovary
3	chr4:84483000-84490600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:84483200-84490600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:84485800-84491000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:84486000-84513000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:84488200-84491400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:84488200-84491600	Enhancers	A549	lung
9	chr4:84488600-84516800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:84489400-84491200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr4:84489400-84503400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:84489800-84491200	Enhancers	Adipose Nuclei	Adipose
13	chr4:84489800-84492200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:84489800-84499600	Weak transcription	Fetal Lung	lung
15	chr4:84490200-84490600	Weak transcription	Left Ventricle	heart
16	chr4:84490200-84491000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:84490200-84491200	Enhancers	Fetal Heart	heart
18	chr4:84490200-84492200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr4:84490400-84491000	Enhancers	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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