Variant report

Variant	rs563855109
Chromosome Location	chr15:34003388-34003389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3328115	chr15:34003360-34007758	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:33993600-34016400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:34001400-34003400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr15:34001600-34004000	ZNF genes & repeats	Fetal Muscle Leg	muscle
6	chr15:34002600-34003400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
7	chr15:34002600-34015800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:34003000-34023600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:34003200-34007800	Weak transcription	Aorta	Aorta
10	chr15:34003200-34013200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:34003200-34014800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:34003200-34015600	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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