The 2.0 version of rSNPBase

Variant report

Variant rs563868688
Chromosome Location chr1:220399324-220399325
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220374600-220407600 Weak transcription Fetal Brain Male brain
2 chr1:220379000-220418200 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr1:220379200-220400400 Weak transcription Right Ventricle heart
4 chr1:220379200-220409600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:220379200-220410800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:220379200-220422600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr1:220380400-220400800 Weak transcription Spleen Spleen
8 chr1:220381200-220422000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr1:220384000-220399400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr1:220384200-220400000 Weak transcription Pancreas Pancrea
11 chr1:220384200-220400200 Weak transcription Fetal Muscle Leg muscle
12 chr1:220384200-220400400 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:220384200-220402800 Weak transcription NHLF lung
14 chr1:220384200-220404400 Weak transcription Ovary ovary
15 chr1:220384200-220408800 Weak transcription A549 lung
16 chr1:220384200-220420600 Weak transcription Fetal Kidney kidney
17 chr1:220384200-220423000 Weak transcription Esophagus oesophagus
18 chr1:220384200-220425800 Weak transcription Placenta Amnion Placenta Amnion
19 chr1:220384400-220400200 Weak transcription Fetal Muscle Trunk muscle
20 chr1:220384400-220413400 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr1:220384800-220400000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr1:220384800-220400000 Weak transcription Left Ventricle heart
23 chr1:220384800-220400800 Weak transcription Duodenum Mucosa Duodenum
24 chr1:220384800-220401000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr1:220384800-220401800 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:220384800-220404400 Weak transcription HSMMtube muscle
27 chr1:220384800-220408000 Weak transcription Hela-S3 cervix
28 chr1:220384800-220417000 Weak transcription Primary T helper naive cells from peripheral blood blood
29 chr1:220385000-220403400 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr1:220385000-220403800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr1:220385000-220405000 Weak transcription Placenta Placenta
32 chr1:220385400-220409000 Weak transcription NH-A brain
33 chr1:220385400-220419400 Weak transcription HUVEC blood vessel
34 chr1:220385600-220400000 Weak transcription Dnd41 blood
35 chr1:220385600-220400200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:220385600-220400200 Weak transcription Primary T killer naive cells fromperipheralblood blood
37 chr1:220385600-220408000 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr1:220385800-220400800 Weak transcription HSMM muscle
39 chr1:220386200-220400800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:220386200-220404000 Weak transcription NHEK skin
41 chr1:220386400-220400000 Weak transcription Fetal Thymus thymus
42 chr1:220386800-220400400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
43 chr1:220387600-220401600 Weak transcription Liver Liver
44 chr1:220393000-220400200 Weak transcription HMEC breast
45 chr1:220393000-220401800 Weak transcription K562 blood
46 chr1:220393000-220405400 Weak transcription Muscle Satellite Cultured Cells --
47 chr1:220393000-220441000 Weak transcription NHDF-Ad bronchial
48 chr1:220393200-220399400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr1:220393200-220403400 Weak transcription Fetal Adrenal Gland Adrenal Gland
50 chr1:220393200-220408800 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015