Variant report

Variant	rs563874377
Chromosome Location	chr10:45202232-45202233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45201624..45204188-chr10:45255999..45258220,2	MCF-7	breast:
2	chr10:45194571..45197405-chr10:45201059..45202685,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2750893	chr10:45195185-45356594	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039167	chr10:45195541-45357798	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1046534	chr10:45196274-45357798	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv870344	chr10:45201522-45366921	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45199000-45202600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:45199200-45204400	Enhancers	HSMMtube	muscle
3	chr10:45200200-45202400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:45200800-45203200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:45201000-45203800	Enhancers	HSMM	muscle
6	chr10:45201000-45204400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:45201200-45204400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr10:45201400-45203400	Enhancers	Osteobl	bone
9	chr10:45201400-45204400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:45201600-45203600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:45201600-45204200	Enhancers	NHDF-Ad	bronchial
12	chr10:45201800-45203200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr10:45201800-45204200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:45202000-45202800	Flanking Active TSS	NH-A	brain
15	chr10:45202000-45203000	Enhancers	NHLF	lung
16	chr10:45202000-45203200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:45202000-45203200	Enhancers	HMEC	breast
18	chr10:45202200-45202600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:45202200-45203600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:45202200-45204200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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