Variant report

Variant	rs563888324
Chromosome Location	chr7:50342776-50342777
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr7:50342456-50343515	H1-hESC	embryonic stem cell:	n/a	chr7:50343421-50343430
2	E2F6	chr7:50342399-50343473	H1-hESC	embryonic stem cell:	n/a	chr7:50343421-50343430
3	MAX	chr7:50342422-50343393	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAX	chr7:50342640-50343285	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr7:50342433-50343540	H1-hESC	embryonic stem cell:	n/a	n/a
6	MAZ	chr7:50342754-50343007	K562	blood:	n/a	n/a
7	ZBTB7A	chr7:50342683-50342888	K562	blood:	n/a	n/a
8	SIN3A	chr7:50342697-50342996	H1-hESC	embryonic stem cell:	n/a	n/a
9	ZNF143	chr7:50342609-50343049	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
IKZF1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3387620	chr7:50342756-50344804	Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50325800-50343000	Weak transcription	K562	blood
2	chr7:50339000-50343000	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr7:50339200-50342800	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr7:50339200-50343000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:50339200-50343000	Enhancers	Fetal Thymus	thymus
6	chr7:50339600-50342800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:50340400-50342800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:50340400-50342800	Weak transcription	Spleen	Spleen
9	chr7:50340800-50342800	Weak transcription	Dnd41	blood
10	chr7:50340800-50343000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:50341000-50342800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr7:50341200-50342800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:50341400-50342800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr7:50341800-50342800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr7:50341800-50343000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr7:50341800-50343000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr7:50342000-50343000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:50342000-50343000	Enhancers	Thymus	Thymus
19	chr7:50342200-50344600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr7:50342400-50343000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:50342400-50343000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:50342400-50343000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr7:50342400-50343200	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr7:50342400-50343400	Bivalent Enhancer	Placenta	Placenta
25	chr7:50342400-50344400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr7:50342600-50342800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
27	chr7:50342600-50342800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr7:50342600-50342800	Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr7:50342600-50342800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr7:50342600-50342800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr7:50342600-50343000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:50342600-50343000	Enhancers	Primary B cells from peripheral blood	blood
33	chr7:50342600-50343000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr7:50342600-50343200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr7:50342600-50343400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr7:50342600-50344600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links