Variant report

Variant	rs563889316
Chromosome Location	chr6:132081726-132081727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132081696..132083980-chr6:132096330..132098091,2	MCF-7	breast:
2	chr6:132080391..132083102-chr6:132085234..132086926,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	esv2445825	chr6:132081209-132082713	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132077400-132083600	Weak transcription	HSMMtube	muscle
2	chr6:132078200-132082200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:132078400-132082200	Weak transcription	HSMM	muscle
4	chr6:132080400-132083800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:132080600-132083200	Enhancers	Osteobl	bone
6	chr6:132080600-132086200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:132080800-132081800	Enhancers	NHDF-Ad	bronchial
8	chr6:132080800-132081800	Enhancers	NHLF	lung
9	chr6:132080800-132087400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:132081000-132085400	Weak transcription	Adipose Nuclei	Adipose
11	chr6:132081000-132087600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:132081400-132081800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:132081400-132082800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:132081400-132083200	Weak transcription	Aorta	Aorta
15	chr6:132081400-132083400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:132081400-132083600	Weak transcription	HepG2	liver
17	chr6:132081600-132085400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:132081600-132085400	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:132081600-132086200	Weak transcription	NH-A	brain
20	chr6:132081600-132086400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:132081600-132086400	Weak transcription	Ovary	ovary

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