Variant report

Variant	rs56389448
Chromosome Location	chr4:95326553-95326554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10003577	0.85[ASN][1000 genomes]
rs10011690	0.88[ASN][1000 genomes]
rs10011765	0.88[ASN][1000 genomes]
rs1593555	0.87[ASN][1000 genomes]
rs1896117	0.87[ASN][1000 genomes]
rs1896118	0.87[ASN][1000 genomes]
rs1960282	0.87[ASN][1000 genomes]
rs2902981	0.87[ASN][1000 genomes]
rs4359908	0.87[ASN][1000 genomes]
rs4699834	0.94[ASN][1000 genomes]
rs4699848	0.87[ASN][1000 genomes]
rs4699849	0.87[ASN][1000 genomes]
rs4699851	0.86[ASN][1000 genomes]
rs55770704	0.85[ASN][1000 genomes]
rs56020558	0.88[ASN][1000 genomes]
rs59408296	0.87[ASN][1000 genomes]
rs60613894	0.86[ASN][1000 genomes]
rs60852827	0.87[ASN][1000 genomes]
rs66649743	0.87[ASN][1000 genomes]
rs67100471	0.87[ASN][1000 genomes]
rs67192700	0.87[ASN][1000 genomes]
rs67524120	0.86[ASN][1000 genomes]
rs67636336	0.96[ASN][1000 genomes]
rs67798520	0.87[ASN][1000 genomes]
rs67843621	0.87[ASN][1000 genomes]
rs72667605	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95318600-95329200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:95322600-95329800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:95323000-95328200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:95324800-95327800	Enhancers	Fetal Heart	heart
5	chr4:95325200-95327800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:95325200-95328200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:95325200-95331800	Weak transcription	Ovary	ovary
8	chr4:95325400-95327000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:95325400-95327400	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:95325400-95331800	Weak transcription	Adipose Nuclei	Adipose
11	chr4:95325400-95333600	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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