Variant report

Variant	rs563903563
Chromosome Location	chr2:168148477-168148478
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3412741	chr2:168148456-168151654	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168144000-168148600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:168144600-168148800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:168147800-168148600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:168148000-168148600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:168148200-168148600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:168148200-168148600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:168148200-168148600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:168148400-168148600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:168148400-168148600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr2:168148400-168148600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:168148400-168148600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:168148400-168148600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:168148400-168148600	Active TSS	Brain Angular Gyrus	brain
14	chr2:168148400-168148600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr2:168148400-168148800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr2:168148400-168148800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr2:168148400-168149000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:168148400-168149000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr2:168148400-168150600	Active TSS	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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