Variant report

Variant	rs563908137
Chromosome Location	chr13:48767659-48767660
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48759722..48761535-chr13:48765446..48768314,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3327569	chr13:48743550-48798094	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1043294	chr13:48762477-48810028	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv1031	chr13:48766510-48790172	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48763400-48768000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr13:48763600-48767800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr13:48764800-48774600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr13:48765600-48768000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr13:48766000-48768000	Weak transcription	HepG2	liver
6	chr13:48766200-48768200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr13:48766400-48768800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr13:48766400-48769000	Enhancers	Primary T cells from cord blood	blood
9	chr13:48766400-48769000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr13:48766400-48769000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr13:48766400-48769000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr13:48766600-48769000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr13:48766800-48768000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr13:48766800-48768000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:48767000-48769600	Enhancers	Primary B cells from cord blood	blood
16	chr13:48767400-48769000	Enhancers	Primary hematopoietic stem cells	blood
17	chr13:48767400-48769000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr13:48767400-48769200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr13:48767400-48769400	Enhancers	Primary B cells from peripheral blood	blood
20	chr13:48767600-48768600	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links