Variant report

Variant	rs563924031
Chromosome Location	chr3:143278902-143278903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143256000-143305600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:143262000-143279200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:143270600-143304800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:143273800-143279800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:143277400-143279600	Weak transcription	Gastric	stomach
6	chr3:143277400-143282400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:143277400-143292400	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:143277400-143301200	Weak transcription	Esophagus	oesophagus
9	chr3:143277400-143303600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:143277400-143310200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr3:143277600-143284200	Weak transcription	Brain Substantia Nigra	brain
12	chr3:143277600-143292400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:143277800-143279200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:143278000-143279000	Enhancers	Fetal Lung	lung
15	chr3:143278200-143284000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr3:143278600-143285200	Weak transcription	Primary B cells from cord blood	blood
17	chr3:143278800-143279000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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