Variant report

Variant	rs563964624
Chromosome Location	chr2:151353340-151353341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151341583..151344657-chr2:151352840..151355389,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115963	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv834414	chr2:151209374-151413309	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1001777	chr2:151351927-151395620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2762286	chr2:151351927-151395632	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151351400-151353400	Enhancers	Fetal Heart	heart
2	chr2:151351800-151353400	Enhancers	HMEC	breast
3	chr2:151351800-151353600	Enhancers	NH-A	brain
4	chr2:151352000-151353600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:151352000-151354200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:151352200-151353400	Flanking Active TSS	A549	lung
7	chr2:151352200-151353600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:151352600-151353400	Flanking Active TSS	HSMMtube	muscle
9	chr2:151352800-151353400	Flanking Active TSS	NHEK	skin
10	chr2:151352800-151353400	Flanking Active TSS	NHLF	lung
11	chr2:151352800-151353400	Flanking Active TSS	Osteobl	bone
12	chr2:151353000-151353400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:151353000-151353400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:151353200-151353400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:151353200-151353400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:151353200-151353400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:151353200-151353400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:151353200-151353400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr2:151353200-151353400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:151353200-151353400	Enhancers	HSMM	muscle
21	chr2:151353200-151353600	Enhancers	Hela-S3	cervix
22	chr2:151353200-151353800	Enhancers	NHDF-Ad	bronchial

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