Variant report

Variant	rs56397530
Chromosome Location	chr3:118986329-118986330
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10511385	1.00[ASN][1000 genomes]
rs11916079	0.90[EUR][1000 genomes]
rs11918661	1.00[ASN][1000 genomes]
rs11922580	1.00[ASN][1000 genomes]
rs12639418	1.00[ASN][1000 genomes]
rs16829649	1.00[ASN][1000 genomes]
rs2594732	0.85[AMR][1000 genomes]
rs2717265	0.85[AMR][1000 genomes]
rs55642684	1.00[ASN][1000 genomes]
rs56054255	1.00[ASN][1000 genomes]
rs56355928	1.00[ASN][1000 genomes]
rs6800377	0.90[EUR][1000 genomes]
rs7640033	0.84[EUR][1000 genomes]
rs7646428	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9813454	1.00[ASN][1000 genomes]
rs9828634	1.00[ASN][1000 genomes]
rs9837492	0.85[AMR][1000 genomes]
rs9839704	1.00[ASN][1000 genomes]
rs9856953	1.00[ASN][1000 genomes]
rs9884021	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118985800-118986800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:118985800-118986800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:118986000-118986400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:118986000-118986800	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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