Variant report

Variant	rs563991525
Chromosome Location	chr7:140153265-140153266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140143508..140145426-chr7:140152981..140155575,2	K562	blood:
2	chr7:140147176..140149855-chr7:140152753..140155201,2	MCF-7	breast:
3	chr7:140149903..140153274-chr7:140154077..140157814,3	MCF-7	breast:
4	chr7:140152800..140155716-chr7:140177894..140179850,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133606	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv966896	chr7:140153046-140156664	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140126400-140176600	Weak transcription	Right Atrium	heart
2	chr7:140133200-140154200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:140135800-140156000	Weak transcription	NHEK	skin
4	chr7:140136600-140154600	Weak transcription	Fetal Brain Male	brain
5	chr7:140140800-140153800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:140142000-140154200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:140144000-140153800	Weak transcription	HepG2	liver
8	chr7:140144000-140154200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:140144000-140154200	Weak transcription	A549	lung
10	chr7:140144000-140154400	Weak transcription	Pancreas	Pancrea
11	chr7:140144800-140153600	Weak transcription	Brain Germinal Matrix	brain
12	chr7:140146000-140153800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:140146400-140154400	Weak transcription	HMEC	breast
14	chr7:140146600-140153400	Weak transcription	Gastric	stomach
15	chr7:140146800-140153400	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:140146800-140154400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:140147400-140153600	Weak transcription	NH-A	brain
18	chr7:140147400-140153800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:140147600-140154600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:140147800-140153600	Weak transcription	Fetal Lung	lung
21	chr7:140147800-140154000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:140148000-140153600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:140148200-140153600	Weak transcription	Brain Substantia Nigra	brain
24	chr7:140149600-140154200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:140149600-140155000	Weak transcription	Psoas Muscle	Psoas
26	chr7:140149800-140153400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:140149800-140153400	Weak transcription	Lung	lung
28	chr7:140149800-140154200	Weak transcription	Right Ventricle	heart
29	chr7:140149800-140154600	Weak transcription	HSMMtube	muscle
30	chr7:140150200-140153600	Weak transcription	NHLF	lung
31	chr7:140150400-140153800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:140150800-140171800	Strong transcription	Fetal Thymus	thymus
33	chr7:140151000-140154200	Weak transcription	HUVEC	blood vessel
34	chr7:140151000-140156200	Strong transcription	Fetal Brain Female	brain
35	chr7:140151000-140171600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr7:140151000-140171600	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr7:140151000-140173400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr7:140151200-140154200	Weak transcription	Esophagus	oesophagus
39	chr7:140151200-140160600	Weak transcription	Stomach Mucosa	stomach
40	chr7:140151200-140161800	Strong transcription	Placenta	Placenta
41	chr7:140151200-140171600	Strong transcription	Adipose Nuclei	Adipose
42	chr7:140151200-140172200	Strong transcription	Fetal Stomach	stomach
43	chr7:140151400-140155400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:140151400-140156200	Strong transcription	Fetal Intestine Large	intestine
45	chr7:140151400-140156800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr7:140151400-140157200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr7:140151400-140161000	Strong transcription	Primary B cells from cord blood	blood
48	chr7:140151400-140162400	Strong transcription	Thymus	Thymus
49	chr7:140151400-140163600	Strong transcription	Primary T cells from cord blood	blood
50	chr7:140151400-140171800	Strong transcription	Primary B cells from peripheral blood	blood

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