Variant report

Variant	rs564006877
Chromosome Location	chr13:39379609-39379610
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv3509197	chr13:39379157-39383529	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
4	esv3509219	chr13:39379198-39383509	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
5	esv3509175	chr13:39379206-39383495	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
6	esv3509208	chr13:39379213-39383570	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
7	esv4433	chr13:39379229-39383505	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
8	esv3509186	chr13:39379272-39383421	Enhancers ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
9	esv3509230	chr13:39379286-39383419	Enhancers ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
10	nsv826623	chr13:39379297-39380543	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	nsv819985	chr13:39379522-39386801	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39376000-39388800	Weak transcription	Gastric	stomach
2	chr13:39376600-39380600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:39377000-39380000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr13:39377400-39379800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr13:39377400-39379800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:39377600-39380400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:39377800-39380400	Enhancers	HMEC	breast
8	chr13:39378200-39380400	Enhancers	NHEK	skin
9	chr13:39378400-39380400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr13:39379000-39380400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:39379000-39380600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:39379200-39380600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:39379600-39380400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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