Variant report

Variant	rs56400805
Chromosome Location	chr13:85199096-85199097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58207406	0.83[AMR][1000 genomes]
rs74101308	0.83[AMR][1000 genomes]
rs74101309	0.83[AMR][1000 genomes]
rs74101330	0.85[AMR][1000 genomes]
rs74101331	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9602508	0.83[AMR][1000 genomes]
rs9602516	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9602520	0.85[AMR][1000 genomes]
rs9602521	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85198800-85199600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:85199000-85199200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
3	chr13:85199000-85199400	Enhancers	Brain Substantia Nigra	brain
4	chr13:85199000-85199400	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links