Variant report
Variant | rs56402329 |
---|---|
Chromosome Location | chr7:149998426-149998427 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10952249 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1132261 | 0.87[AFR][1000 genomes] |
rs11764936 | 0.82[EUR][1000 genomes] |
rs11765644 | 0.82[EUR][1000 genomes] |
rs11766288 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11769348 | 0.82[EUR][1000 genomes] |
rs11773351 | 0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs11974980 | 0.81[EUR][1000 genomes] |
rs11975886 | 0.81[EUR][1000 genomes] |
rs13223702 | 0.87[AFR][1000 genomes] |
rs17837498 | 0.81[EUR][1000 genomes] |
rs1962004 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs2098053 | 0.83[AFR][1000 genomes] |
rs2373751 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs34489187 | 0.94[AFR][1000 genomes] |
rs34728606 | 0.87[AFR][1000 genomes] |
rs36069544 | 0.81[AFR][1000 genomes] |
rs3735167 | 1.00[AFR][1000 genomes] |
rs3735171 | 0.81[EUR][1000 genomes] |
rs3800780 | 0.82[EUR][1000 genomes] |
rs3800781 | 0.82[EUR][1000 genomes] |
rs4395803 | 0.82[EUR][1000 genomes] |
rs55715989 | 0.81[EUR][1000 genomes] |
rs55881542 | 0.82[EUR][1000 genomes] |
rs56019796 | 0.81[EUR][1000 genomes] |
rs56190213 | 0.94[AFR][1000 genomes];0.82[EUR][1000 genomes] |
rs56923535 | 0.81[EUR][1000 genomes] |
rs56998970 | 0.81[EUR][1000 genomes] |
rs57888387 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs59572505 | 0.81[EUR][1000 genomes] |
rs60467296 | 0.81[EUR][1000 genomes] |
rs73170169 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs73170185 | 0.82[EUR][1000 genomes] |
rs7781827 | 0.81[EUR][1000 genomes] |
rs7788316 | 0.81[EUR][1000 genomes] |
rs7806429 | 0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv889435 | chr7:149585379-150013393 | ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv889452 | chr7:149838371-150003208 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv1034409 | chr7:149844639-150447071 | Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
4 | nsv608990 | chr7:149961274-150707488 | Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
5 | nsv970966 | chr7:149961366-150002640 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
6 | nsv1015582 | chr7:149967986-150285104 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs56402329 | LRRC61 | cis | Thyroid | GTEx |
rs56402329 | LRRC61 | cis | Nerve Tibial | GTEx |
rs56402329 | C7orf29 | Cis_1M | lymphoblastoid | RTeQTL |
rs56402329 | LRRC61 | cis | Muscle Skeletal | GTEx |
rs56402329 | LRRC61 | Cis_1M | lymphoblastoid | RTeQTL |
rs56402329 | ZBED6CL | cis | Esophagus Muscularis | GTEx |
rs56402329 | LRRC61 | cis | Skin Sun Exposed Lower leg | GTEx |
rs56402329 | LRRC61 | cis | lung | GTEx |
rs56402329 | LRRC61 | cis | Esophagus Mucosa | GTEx |
rs56402329 | RARRES2 | cis | multi-tissue | Pritchard |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:149978800-150000000 | Weak transcription | Pancreas | Pancrea |
2 | chr7:149984200-150012400 | Weak transcription | Liver | Liver |
3 | chr7:149984200-150019400 | Weak transcription | Colonic Mucosa | Colon |
4 | chr7:149985400-150002600 | Weak transcription | Primary hematopoietic stem cells | blood |
5 | chr7:149992400-150018000 | Weak transcription | Fetal Intestine Small | intestine |
6 | chr7:149998000-149998600 | Enhancers | K562 | blood |