Variant report

Variant	rs564029826
Chromosome Location	chr3:58274728-58274729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529990	chr3:57897017-58395655	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv528147	chr3:57915474-58370177	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv834703	chr3:58058518-58284497	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1001814	chr3:58144608-58339924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv590369	chr3:58269712-58317692	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv3384845	chr3:58274062-58278060	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:58237400-58275600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:58238000-58276000	Weak transcription	Stomach Mucosa	stomach
3	chr3:58238600-58277400	Weak transcription	GM12878-XiMat	blood
4	chr3:58240600-58281600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr3:58243400-58275200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr3:58245000-58275600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:58251800-58276200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:58254800-58276200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:58255200-58276400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:58258000-58275800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:58258800-58281600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:58258800-58282000	Weak transcription	NHEK	skin
13	chr3:58259600-58275000	Weak transcription	K562	blood
14	chr3:58260600-58282400	Weak transcription	NHDF-Ad	bronchial
15	chr3:58260800-58285400	Weak transcription	Fetal Brain Male	brain
16	chr3:58261000-58281000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:58261000-58284000	Weak transcription	Pancreas	Pancrea
18	chr3:58261400-58282200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:58264800-58278000	Weak transcription	Fetal Thymus	thymus
20	chr3:58265600-58274800	Strong transcription	Fetal Intestine Large	intestine
21	chr3:58265800-58274800	Strong transcription	Adipose Nuclei	Adipose
22	chr3:58266400-58275000	Strong transcription	Fetal Intestine Small	intestine
23	chr3:58267200-58276000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr3:58268000-58280600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:58269200-58282000	Weak transcription	Colonic Mucosa	Colon
26	chr3:58270600-58275000	Strong transcription	Brain Germinal Matrix	brain
27	chr3:58270800-58275400	Weak transcription	Small Intestine	intestine
28	chr3:58271400-58276600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:58271400-58280000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:58271400-58280400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:58271400-58281000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:58271400-58282000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:58272400-58275800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:58272400-58281000	Weak transcription	Colon Smooth Muscle	Colon
35	chr3:58272600-58274800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:58272800-58274800	Enhancers	Brain Substantia Nigra	brain
37	chr3:58272800-58274800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr3:58272800-58274800	Genic enhancers	Fetal Muscle Leg	muscle
39	chr3:58273000-58274800	Genic enhancers	Brain Inferior Temporal Lobe	brain
40	chr3:58273000-58274800	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr3:58273000-58275000	Strong transcription	Stomach Smooth Muscle	stomach
42	chr3:58273400-58274800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:58273400-58274800	Enhancers	HepG2	liver
44	chr3:58273400-58281800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr3:58273400-58283400	Weak transcription	Thymus	Thymus
46	chr3:58273600-58274800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr3:58273600-58277000	Weak transcription	Right Ventricle	heart
48	chr3:58274000-58274800	Genic enhancers	Brain Cingulate Gyrus	brain
49	chr3:58274000-58278800	Weak transcription	Gastric	stomach
50	chr3:58274200-58274800	Weak transcription	Fetal Muscle Trunk	muscle

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