Variant report

Variant	rs56403226
Chromosome Location	chr17:19809078-19809079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:19806568..19809445-chr17:20006913..20008589,2	K562	blood:
2	chr17:19769508..19771836-chr17:19806966..19809532,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083290	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72841961	1.00[AMR][1000 genomes]
rs72841969	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv907869	chr17:19795774-19926836	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19796400-19809800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:19801400-19814200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:19801600-19814600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:19802200-19814200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr17:19802800-19824000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr17:19802800-19829000	Strong transcription	Fetal Muscle Leg	muscle
7	chr17:19802800-19844400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr17:19802800-19846400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr17:19802800-19852400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr17:19803000-19810400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr17:19803000-19810400	Strong transcription	Stomach Smooth Muscle	stomach
12	chr17:19803000-19813200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr17:19803000-19822000	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr17:19803000-19824400	Strong transcription	Fetal Muscle Trunk	muscle
15	chr17:19803000-19851800	Strong transcription	Fetal Thymus	thymus
16	chr17:19803200-19840800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr17:19803600-19813400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr17:19803600-19814000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr17:19803600-19826200	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr17:19803600-19829800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:19803600-19845400	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr17:19803600-19848000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr17:19803800-19812000	Strong transcription	Fetal Intestine Small	intestine
24	chr17:19803800-19818000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr17:19803800-19822400	Strong transcription	Primary T cells from cord blood	blood
26	chr17:19803800-19823400	Strong transcription	Duodenum Mucosa	Duodenum
27	chr17:19803800-19824000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr17:19803800-19830800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr17:19804000-19823600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr17:19804000-19844400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr17:19804000-19853000	Strong transcription	Dnd41	blood
32	chr17:19804200-19810600	Strong transcription	Primary B cells from cord blood	blood
33	chr17:19804600-19809800	Weak transcription	Aorta	Aorta
34	chr17:19805400-19814200	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr17:19805600-19823800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr17:19805800-19824000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr17:19806200-19810400	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr17:19806200-19812000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr17:19806200-19844000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr17:19806200-19844600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr17:19806400-19810200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr17:19806400-19812200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr17:19806400-19830200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr17:19806400-19846200	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr17:19806600-19810400	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr17:19806600-19810600	Strong transcription	Fetal Brain Female	brain
47	chr17:19806600-19813200	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr17:19806800-19809200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr17:19806800-19809800	Weak transcription	Colon Smooth Muscle	Colon
50	chr17:19806800-19810000	Strong transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links