Variant report

Variant	rs56403434
Chromosome Location	chr1:76467866-76467867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76465512..76468433-chr1:76470100..76472168,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1251534	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12726486	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12727287	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12731410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12732407	0.83[ASN][1000 genomes]
rs12732472	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12739244	1.00[EUR][1000 genomes]
rs12740253	0.83[ASN][1000 genomes]
rs12743235	0.83[ASN][1000 genomes]
rs12749266	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12759945	0.83[ASN][1000 genomes]
rs1612901	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34218840	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34270172	0.83[ASN][1000 genomes]
rs34812705	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34892795	0.83[ASN][1000 genomes]
rs34898565	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34977392	0.83[ASN][1000 genomes]
rs35416402	0.83[ASN][1000 genomes]
rs35424470	0.83[ASN][1000 genomes]
rs35614774	0.83[ASN][1000 genomes]
rs35857029	0.83[ASN][1000 genomes]
rs35961154	0.83[ASN][1000 genomes]
rs35970385	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4335328	0.83[ASN][1000 genomes]
rs4472716	0.83[ASN][1000 genomes]
rs55764969	0.83[ASN][1000 genomes]
rs55970724	0.83[ASN][1000 genomes]
rs57218288	0.83[ASN][1000 genomes]
rs5745317	0.83[ASN][1000 genomes]
rs5745328	0.83[ASN][1000 genomes]
rs5745332	0.83[ASN][1000 genomes]
rs5745352	0.83[ASN][1000 genomes]
rs5745355	0.83[ASN][1000 genomes]
rs5745362	0.83[ASN][1000 genomes]
rs5745368	0.83[ASN][1000 genomes]
rs5745369	0.83[ASN][1000 genomes]
rs5745376	0.83[ASN][1000 genomes]
rs5745380	0.83[ASN][1000 genomes]
rs5745391	0.83[ASN][1000 genomes]
rs5745425	0.83[ASN][1000 genomes]
rs5745428	0.83[ASN][1000 genomes]
rs5745434	0.83[ASN][1000 genomes]
rs5745438	0.83[ASN][1000 genomes]
rs58068229	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71656851	0.83[ASN][1000 genomes]
rs71656852	0.83[ASN][1000 genomes]
rs71656854	0.83[ASN][1000 genomes]
rs71656855	0.83[ASN][1000 genomes]
rs71656857	0.83[ASN][1000 genomes]
rs71656858	0.83[ASN][1000 genomes]
rs71656866	0.83[ASN][1000 genomes]
rs71656867	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71656870	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74089618	0.83[ASN][1000 genomes]
rs74089619	0.83[ASN][1000 genomes]
rs74089674	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76467000-76476600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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