Variant report

Variant	rs564047009
Chromosome Location	chr7:99131016-99131017
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99129008..99131718-chr7:99137131..99141580,3	K562	blood:
2	chr7:99128997..99131650-chr7:99148283..99150695,2	MCF-7	breast:
3	chr7:99118652..99120616-chr7:99129028..99131521,2	K562	blood:
4	chr7:99128290..99131980-chr7:99159807..99163198,3	K562	blood:
5	chr7:99131004..99133205-chr7:99216601..99219194,3	K562	blood:
6	chr7:99129504..99131307-chr7:99134135..99135711,2	K562	blood:
7	chr7:99129430..99132256-chr7:99148288..99150632,4	MCF-7	breast:
8	chr7:99091192..99093523-chr7:99128695..99131572,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197037	Chromatin interaction
ENSG00000221909	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv819741	chr7:99130848-99131615	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99122400-99132800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:99125000-99131400	ZNF genes & repeats	GM12878-XiMat	blood
3	chr7:99125200-99131800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr7:99125400-99131800	ZNF genes & repeats	Liver	Liver
5	chr7:99125600-99131800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:99125600-99131800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr7:99125800-99131600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
8	chr7:99125800-99131800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:99125800-99131800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr7:99125800-99131800	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr7:99125800-99131800	ZNF genes & repeats	Fetal Lung	lung
12	chr7:99125800-99131800	ZNF genes & repeats	Fetal Muscle Leg	muscle
13	chr7:99125800-99132000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:99125800-99132000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:99125800-99132000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
16	chr7:99125800-99133000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:99126000-99131200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr7:99126000-99131400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
19	chr7:99126000-99131400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
20	chr7:99126000-99131600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:99126000-99131600	ZNF genes & repeats	Ovary	ovary
22	chr7:99126000-99131600	ZNF genes & repeats	Thymus	Thymus
23	chr7:99126000-99131800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
24	chr7:99126000-99131800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr7:99126000-99131800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr7:99126000-99131800	ZNF genes & repeats	Placenta	Placenta
27	chr7:99126000-99132000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:99126000-99132000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr7:99126000-99132000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
30	chr7:99126000-99132600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:99126000-99132800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:99126000-99132800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:99126000-99133200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:99126000-99133800	ZNF genes & repeats	Fetal Stomach	stomach
35	chr7:99126200-99131400	ZNF genes & repeats	Adipose Nuclei	Adipose
36	chr7:99126200-99131800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:99126400-99131200	ZNF genes & repeats	Primary B cells from cord blood	blood
38	chr7:99126400-99131800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:99126400-99131800	ZNF genes & repeats	A549	lung
40	chr7:99126600-99131200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
41	chr7:99126800-99131400	ZNF genes & repeats	Fetal Intestine Large	intestine
42	chr7:99127000-99131600	ZNF genes & repeats	Fetal Brain Male	brain
43	chr7:99127400-99131600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:99127400-99131600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
45	chr7:99127800-99131800	ZNF genes & repeats	Fetal Brain Female	brain
46	chr7:99128000-99131200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
47	chr7:99128000-99131200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
48	chr7:99128000-99131200	ZNF genes & repeats	HUVEC	blood vessel
49	chr7:99128000-99131600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:99128000-99131600	ZNF genes & repeats	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links