The 2.0 version of rSNPBase

Variant report

Variant rs564059154
Chromosome Location chr3:52599290-52599291
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52572400-52633000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr3:52574400-52623800 Strong transcription Monocytes-CD14+_RO01746 blood
3 chr3:52574800-52605000 Strong transcription Breast Myoepithelial Primary Cells Breast
4 chr3:52576800-52625600 Strong transcription Fetal Thymus thymus
5 chr3:52577600-52605200 Strong transcription Dnd41 blood
6 chr3:52578200-52625600 Strong transcription Primary monocytes fromperipheralblood blood
7 chr3:52578400-52600600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
8 chr3:52578800-52599600 Strong transcription Fetal Muscle Trunk muscle
9 chr3:52578800-52601400 Strong transcription Primary B cells from peripheral blood blood
10 chr3:52581000-52601000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
11 chr3:52583200-52600400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr3:52583200-52600800 Strong transcription Rectal Mucosa Donor 29 rectum
13 chr3:52585800-52627400 Weak transcription Fetal Heart heart
14 chr3:52587000-52602400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr3:52587200-52719200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr3:52589600-52611600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr3:52591000-52688000 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr3:52591200-52601400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr3:52592200-52719200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr3:52592400-52601600 Strong transcription Cortex derived primary cultured neurospheres brain
21 chr3:52592600-52607600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr3:52592600-52610400 Weak transcription A549 lung
23 chr3:52594400-52607800 Weak transcription Aorta Aorta
24 chr3:52594400-52614800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
25 chr3:52595200-52599600 Strong transcription Fetal Intestine Small intestine
26 chr3:52595200-52631000 Weak transcription Stomach Mucosa stomach
27 chr3:52595400-52599600 Strong transcription Fetal Stomach stomach
28 chr3:52595800-52607800 Weak transcription Brain Cingulate Gyrus brain
29 chr3:52596000-52599400 Weak transcription Hela-S3 cervix
30 chr3:52596000-52600000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr3:52596000-52600800 Strong transcription Osteobl bone
32 chr3:52596000-52607600 Weak transcription Brain Inferior Temporal Lobe brain
33 chr3:52596000-52608200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr3:52596000-52608200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr3:52596000-52608200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr3:52596000-52611800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
37 chr3:52596000-52612400 Weak transcription Gastric stomach
38 chr3:52596000-52622800 Weak transcription K562 blood
39 chr3:52596000-52624200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr3:52596200-52601400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr3:52596200-52604000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr3:52596400-52611800 Weak transcription Spleen Spleen
43 chr3:52597400-52606800 Weak transcription Brain Hippocampus Middle brain
44 chr3:52597400-52608000 Weak transcription NHEK skin
45 chr3:52597400-52611600 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr3:52597600-52607600 Weak transcription Placenta Amnion Placenta Amnion
47 chr3:52597600-52608600 Weak transcription H9 Cell Line embryonic stem cell
48 chr3:52597600-52611800 Weak transcription Pancreas Pancrea
49 chr3:52597600-52612000 Weak transcription Brain Substantia Nigra brain
50 chr3:52597600-52612000 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015